Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1054
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z93376-1|CAB07570.3|  472|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    29   3.6  
AL132949-41|CAC35868.2|  472|Caenorhabditis elegans Hypothetical...    29   3.6  
Z81502-6|CAB04109.3|  345|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical
           protein F13H8.2 protein.
          Length = 929

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +1

Query: 136 ISTCLKSQHRSQILACHTVAIKLKNQHISYLKKRSYRIPLVTPVMFVIVYGF*KILNV 309
           IS+C + Q+++++  C  VA+ L   H+S++   S  +P+   +   +  G  K+ NV
Sbjct: 825 ISSCTQQQYKAEL--CTHVAVYLTRIHLSHITASSDYVPIFEQMKSKMSEGVEKLRNV 880


>U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical
           protein F46H5.7b protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 99  NQPRNEFIENEDNINMSEES 158
           NQPR++F    +N+N+SEES
Sbjct: 140 NQPRSQFDAQPENVNISEES 159


>U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical
           protein F46H5.7a protein.
          Length = 572

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 99  NQPRNEFIENEDNINMSEES 158
           NQPR++F    +N+N+SEES
Sbjct: 140 NQPRSQFDAQPENVNISEES 159


>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 87  WKFYNQPRNEFIENEDNINM 146
           WK  N+P N FIEN D   M
Sbjct: 359 WKLLNKPENHFIENLDPAEM 378


>Z93376-1|CAB07570.3|  472|Caenorhabditis elegans Hypothetical
           protein E01F3.1a protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 87  WKFYNQPRNEFIENEDNINM 146
           WK  N+P N FIEN D   M
Sbjct: 238 WKLLNKPENHFIENLDPAEM 257


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 87  WKFYNQPRNEFIENEDNINM 146
           WK  N+P N FIEN D   M
Sbjct: 359 WKLLNKPENHFIENLDPAEM 378


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 87  WKFYNQPRNEFIENEDNINM 146
           WK  N+P N FIEN D   M
Sbjct: 359 WKLLNKPENHFIENLDPAEM 378


>AL132949-41|CAC35868.2|  472|Caenorhabditis elegans Hypothetical
           protein E01F3.1a protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 87  WKFYNQPRNEFIENEDNINM 146
           WK  N+P N FIEN D   M
Sbjct: 238 WKLLNKPENHFIENLDPAEM 257


>Z81502-6|CAB04109.3|  345|Caenorhabditis elegans Hypothetical
           protein F14B6.6a protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +3

Query: 78  LMKWKFYNQPRNEFIENEDNINMSEE--STSEPNSSLPY-RSYQ 200
           L+ +++Y+Q   EF+  ED + +  E   +S+ NS+  Y  SYQ
Sbjct: 16  LLAYRYYSQRTMEFLIEEDQMCLQREWYESSQINSTADYGNSYQ 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,988,539
Number of Sequences: 27780
Number of extensions: 280986
Number of successful extensions: 643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)