Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1054
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.46 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 527 WIFKTIIRS*KGNIAF*DTGSGSFAHHDLSDIRK 426
           +I K ++    G +AF D G   FA +D+ +I++
Sbjct: 334 FIRKQVLSGSTGKVAFDDNGDRIFAEYDIINIQE 367


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 383 IIVNYTTMGLLYRNSFK 333
           I+V YT MGL  RNS K
Sbjct: 228 ILVVYTRMGLKIRNSTK 244


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 483 GNIPFLATYNGFKYPQRPV 539
           G  P +   NG  +PQRP+
Sbjct: 294 GYYPTMTYSNGLPFPQRPI 312


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 483 GNIPFLATYNGFKYPQRPV 539
           G  P +   NG  +PQRP+
Sbjct: 294 GYYPTMTYSNGLPFPQRPI 312


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 406 YMIFFRILRMSLKS*CAKLPEP 471
           Y I+FRI R  L     K+P P
Sbjct: 26  YFIYFRISRRHLLELAEKIPGP 47


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 261 ACNVCDRLWFLE 296
           A + CDRLW L+
Sbjct: 128 AIDKCDRLWVLD 139


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 273 CDRLWFLEDLK 305
           CDRLW L+  K
Sbjct: 256 CDRLWILDSGK 266


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 267 NVCDRLWFLE 296
           ++CDRLW L+
Sbjct: 128 DMCDRLWVLD 137


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 261 ACNVCDRLWFLE 296
           A + CDRLW L+
Sbjct: 128 AIDKCDRLWVLD 139


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 261 ACNVCDRLWFLE 296
           A + CDRLW L+
Sbjct: 128 AIDKCDRLWVLD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,283
Number of Sequences: 438
Number of extensions: 3725
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)