Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1054
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16750.1 68418.m01961 transducin family protein / WD-40 repea...    31   0.63 
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...    28   4.4  
At3g17750.1 68416.m02265 protein kinase family protein contains ...    28   5.8  
At2g01500.1 68415.m00073 homeobox-leucine zipper transcription f...    28   5.8  
At4g23290.2 68417.m03357 protein kinase family protein contains ...    27   7.7  
At4g23290.1 68417.m03356 protein kinase family protein contains ...    27   7.7  
At4g23260.1 68417.m03353 protein kinase family protein contains ...    27   7.7  
At3g04740.1 68416.m00510 expressed protein (SWP1)                      27   7.7  

>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
           family protein contains 8 WD-40 repeats (PF00400);
           similar to transducin homolog sazD - Homo sapiens,
           EMBL:U02609
          Length = 876

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 105 PRNEFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFG 257
           P++E  + +D I   E+ T E     P R  ++QKS  K  KK+++  + G
Sbjct: 821 PKDEKKKEKDVIAAMEQDTDELKQETPSRKRKSQKSKGKSNKKRLIAEAQG 871


>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +3

Query: 450 MCKTSRASILKGNIPFLATYNG--FKYPQ---RPVDLPELDIIAERLI 578
           +CK       +  IP+L TY+G   +YP    +P D  +LD+ A +++
Sbjct: 123 LCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIV 170


>At3g17750.1 68416.m02265 protein kinase family protein contains Pfam
            profile: PF00069 Eukaryotic protein kinase domain
          Length = 1138

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 91   NFTTSRGMNSLKMKTISTCLKSQHRSQILACHTVAIKLKNQHI-SYLKKRSYRIPLV 258
            NF    G+    +K  +  +KS  R +I      +   +  H+ SY++ RSYR P V
Sbjct: 946  NFLHGLGLIHCDLKPENILIKSYSRCEIKVIDLGSSCFETDHLCSYVQSRSYRAPEV 1002


>At2g01500.1 68415.m00073 homeobox-leucine zipper transcription
           factor family protein similar to wuschel protein
           (GI:22087128) [Arabidopsis thaliana]
          Length = 271

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 78  LMKWKFYNQPRNEFIENEDNINMSEESTSEPN--SSLPYRSYQTQKSAHKLFKKKILQNS 251
           L+ W    QP  E I  ++N+N  EE T +    +  P R YQ +K+   + K K     
Sbjct: 205 LVTWSITQQP--EEINIDENVNGEEEETRDNRTLNLFPVREYQ-EKTGRLIEKTK----- 256

Query: 252 FGHACNVC 275
              ACN C
Sbjct: 257 ---ACNYC 261


>At4g23290.2 68417.m03357 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 690

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
 Frame = -3

Query: 556 SNSGKSTGLCGYLKPLYVA------KKGILPFKILALEVL 455
           +N+G+  G  GY+ P YVA      K  +  F +L LE++
Sbjct: 520 ANTGRVVGTFGYMPPEYVANGQFSTKSDVYSFGVLILEII 559


>At4g23290.1 68417.m03356 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 600

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
 Frame = -3

Query: 556 SNSGKSTGLCGYLKPLYVA------KKGILPFKILALEVL 455
           +N+G+  G  GY+ P YVA      K  +  F +L LE++
Sbjct: 430 ANTGRVVGTFGYMPPEYVANGQFSTKSDVYSFGVLILEII 469


>At4g23260.1 68417.m03353 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 579

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = -3

Query: 559 ISNSGKSTGLCGYLKPLYVA------KKGILPFKILALEVL 455
           ++N+G+  G  GY+ P YV       K  +  F +L LE++
Sbjct: 415 VANTGRVVGTFGYMSPEYVTHGQFSMKSDVYSFGVLILEII 455


>At3g04740.1 68416.m00510 expressed protein (SWP1)
          Length = 1703

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 574 SLSAIISNSGKSTGLCGYLKPLYVAKKGILPFKILALEVLHIM 446
           +LS  +S S K+ G C Y   +  A KG  P  +    +LH++
Sbjct: 824 TLSTAVSTSTKTIG-CSYGNLIAEANKGNAPSSVFVYALLHVV 865


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,145,670
Number of Sequences: 28952
Number of extensions: 258245
Number of successful extensions: 654
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)