Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1053
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    29   0.58 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   3.1  
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha...    25   7.2  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   9.5  
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    25   9.5  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    25   9.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   9.5  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 183 RSTSETWG*HEWEMLLLYYVIQNKYTKMQLVIRCL 287
           RS S  WG   WE +L+  VI  + T  Q V+  L
Sbjct: 278 RSKSRVWGNESWEKVLVCVVIDGRNTVHQNVLDLL 312


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 176 LNKEYLRDMGITRMGDVIAILRHSK-QVHENAARDKVLSNTSVNKVPVAAITGRSTLPQP 352
           +N ++L +  IT      A  R  K + H + A  K+ +    NKV   A+T +STLP  
Sbjct: 160 MNNQFLMNKPITVS---YAFKREGKGERHGDIAERKLAAAAKKNKV---AVTPQSTLPPG 213

Query: 353 SSPAS 367
            SPA+
Sbjct: 214 FSPAT 218


>SPAC29B12.04 |snz1||pyridoxine biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 191 LRDMGITRMGDVIAILRHSKQVHENAARDKVLS 289
           +R  G    GDV+  +RH++Q+     R K +S
Sbjct: 148 IRTKGEAGTGDVVEAVRHTRQMQGELRRVKSMS 180


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 98  GIPSDVAATYALTFTENRIQSDMLLDL 178
           G P +VAATY L  +  R+Q   ++DL
Sbjct: 399 GYPLNVAATYRLDESLLRLQMPSIVDL 425


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 272 RDKVLSNTSVNKVPVAAITGRSTL 343
           RDK+L++T    VP+  +  +S L
Sbjct: 100 RDKILNHTGTEWVPIVVVGNKSDL 123


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
 Frame = +2

Query: 35  VKNNK-MDSNLTGMWVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGIT 211
           VKN K +  N+   + S F +  +   ++  YA+     ++  DML+D+N      +   
Sbjct: 224 VKNIKQLSKNIDASFTSIFYSVFM---LSIYYAIA-KNGKVNLDMLIDVNARRFLPVAKQ 279

Query: 212 RMGDVIAILRHSKQVHENAARDKVLSNTSVNKVPVAAITGRSTLPQPSSPASRI 373
            MG+ +    H     + + R +   +T V+     +   ++ L  P   + +I
Sbjct: 280 TMGNYVFSYVHHLNGFQPSQRQEDYKHTMVDLATEFSHRLKAALSNPREMSQQI 333


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 320 AITGRSTLPQPSSPASRILEHYTRN 394
           +ITG+S + Q SSP  R ++ +  N
Sbjct: 678 SITGKSIVEQASSPLERRMDAFDEN 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,519
Number of Sequences: 5004
Number of extensions: 40971
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)