BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1053 (539 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.58 SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 3.1 SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha... 25 7.2 SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 9.5 SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 25 9.5 SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 25 9.5 SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 9.5 >SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schizosaccharomyces pombe|chr 2|||Manual Length = 926 Score = 28.7 bits (61), Expect = 0.58 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +3 Query: 183 RSTSETWG*HEWEMLLLYYVIQNKYTKMQLVIRCL 287 RS S WG WE +L+ VI + T Q V+ L Sbjct: 278 RSKSRVWGNESWEKVLVCVVIDGRNTVHQNVLDLL 312 >SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizosaccharomyces pombe|chr 1|||Manual Length = 335 Score = 26.2 bits (55), Expect = 3.1 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +2 Query: 176 LNKEYLRDMGITRMGDVIAILRHSK-QVHENAARDKVLSNTSVNKVPVAAITGRSTLPQP 352 +N ++L + IT A R K + H + A K+ + NKV A+T +STLP Sbjct: 160 MNNQFLMNKPITVS---YAFKREGKGERHGDIAERKLAAAAKKNKV---AVTPQSTLPPG 213 Query: 353 SSPAS 367 SPA+ Sbjct: 214 FSPAT 218 >SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 296 Score = 25.0 bits (52), Expect = 7.2 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +2 Query: 191 LRDMGITRMGDVIAILRHSKQVHENAARDKVLS 289 +R G GDV+ +RH++Q+ R K +S Sbjct: 148 IRTKGEAGTGDVVEAVRHTRQMQGELRRVKSMS 180 >SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharomyces pombe|chr 2|||Manual Length = 865 Score = 24.6 bits (51), Expect = 9.5 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 98 GIPSDVAATYALTFTENRIQSDMLLDL 178 G P +VAATY L + R+Q ++DL Sbjct: 399 GYPLNVAATYRLDESLLRLQMPSIVDL 425 >SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr 2|||Manual Length = 185 Score = 24.6 bits (51), Expect = 9.5 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +2 Query: 272 RDKVLSNTSVNKVPVAAITGRSTL 343 RDK+L++T VP+ + +S L Sbjct: 100 RDKILNHTGTEWVPIVVVGNKSDL 123 >SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 440 Score = 24.6 bits (51), Expect = 9.5 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 1/114 (0%) Frame = +2 Query: 35 VKNNK-MDSNLTGMWVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGIT 211 VKN K + N+ + S F + + ++ YA+ ++ DML+D+N + Sbjct: 224 VKNIKQLSKNIDASFTSIFYSVFM---LSIYYAIA-KNGKVNLDMLIDVNARRFLPVAKQ 279 Query: 212 RMGDVIAILRHSKQVHENAARDKVLSNTSVNKVPVAAITGRSTLPQPSSPASRI 373 MG+ + H + + R + +T V+ + ++ L P + +I Sbjct: 280 TMGNYVFSYVHHLNGFQPSQRQEDYKHTMVDLATEFSHRLKAALSNPREMSQQI 333 >SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1150 Score = 24.6 bits (51), Expect = 9.5 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +2 Query: 320 AITGRSTLPQPSSPASRILEHYTRN 394 +ITG+S + Q SSP R ++ + N Sbjct: 678 SITGKSIVEQASSPLERRMDAFDEN 702 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,121,519 Number of Sequences: 5004 Number of extensions: 40971 Number of successful extensions: 120 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 120 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 221892220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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