Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1053
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1348 + 32807308-32807874                                         40   0.001
06_01_0553 + 3942907-3943617                                           37   0.009
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    29   1.8  
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    28   4.1  
09_02_0295 - 7039870-7040634                                           27   7.2  
09_03_0103 - 12383585-12384700                                         27   9.6  

>04_04_1348 + 32807308-32807874
          Length = 188

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = +2

Query: 74  WVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQ 253
           W ++ + A +   VA  YAL F+ N +++D L   + E+L  MG++     + IL+ +++
Sbjct: 5   WYAWLSAARLDQAVAYEYALVFSRNELEADDLAYFDHEFLHSMGVSVAKHRLEILKLARR 64

Query: 254 VHENAA 271
               AA
Sbjct: 65  SRRRAA 70


>06_01_0553 + 3942907-3943617
          Length = 236

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 24/89 (26%), Positives = 42/89 (47%)
 Frame = +2

Query: 74  WVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQ 253
           W ++   AG+  DVA  YA  F  N + +D L  L+   L  MG       + I +H  +
Sbjct: 3   WYAWLCRAGLHPDVAFEYARLFARNELAADDLRHLDHGLLATMG-------VPIAKHRLE 55

Query: 254 VHENAARDKVLSNTSVNKVPVAAITGRST 340
           + + A R+   S++S + +    +  R+T
Sbjct: 56  ILKLARRESPPSSSSSSSLAAVRLPWRAT 84


>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 82  FLHNSWYTIRCGCYICTYIYREQDPE*YAVGSE*GVPQRHGDNTNGRCYC 231
           +LH+ +  I+ G Y   +IY  QD + ++  SE G   R    T GRC C
Sbjct: 151 YLHSIYRKIKEGRYTDLFIYGYQDADKFS-SSEFGALFREEAATIGRCPC 199


>07_01_0389 -
           2915191-2915604,2915696-2915752,2915867-2915922,
           2916053-2916113,2916243-2916365,2916505-2916537,
           2916617-2916709,2916839-2916934,2917025-2917203,
           2917344-2917530,2918051-2918184,2918311-2918518,
           2918598-2918633,2918785-2919241,2919633-2919736,
           2920489-2920569,2920646-2920697,2920837-2920876,
           2920991-2921085,2921241-2921383,2921899-2922006,
           2922120-2922221,2922302-2922348,2922425-2922554,
           2923173-2923304,2923404-2923616,2923709-2923963,
           2924053-2924799
          Length = 1460

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 308 VPVAAITGRSTLPQPSSPASRILEHYTRN 394
           V ++  T R + P PS   SR+ EH T N
Sbjct: 836 VTISQETNRDSQPSPSGMMSRVTEHETNN 864


>09_02_0295 - 7039870-7040634
          Length = 254

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -3

Query: 267 AFSCTCFE*RNIAITSPIRVIPMSLRYSLFRSNSISLWILFSVNVSAYV 121
           AF  + F+  ++  T P+  + + +  ++  +  +SLW L  +NV+ YV
Sbjct: 204 AFCRSLFKHSSLHSTVPMIQVGVYVELTILIAAIVSLWTLVGINVTPYV 252


>09_03_0103 - 12383585-12384700
          Length = 371

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/74 (27%), Positives = 29/74 (39%)
 Frame = +1

Query: 28  NECKKQQNGFKPNRYVGKFLHNSWYTIRCGCYICTYIYREQDPE*YAVGSE*GVPQRHGD 207
           + C     GF P+    K +H           +C  I+   D     +GS  G P   G 
Sbjct: 146 SSCNWHCLGFCPSTKEHKVVHFYLGAHFDSFNVCCEIFTIGDKSWRQIGSFHGAPTDRGV 205

Query: 208 NTNGRCYCYITSFK 249
           + NG  Y Y+T F+
Sbjct: 206 HVNGAVY-YLTKFR 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,804
Number of Sequences: 37544
Number of extensions: 270159
Number of successful extensions: 650
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)