Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1053
(539 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46610| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 5e-07
SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21) 35 0.049
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 29 2.4
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08) 29 3.2
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 28 5.6
SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13) 27 7.4
SB_41643| Best HMM Match : uDENN (HMM E-Value=3.5) 27 7.4
SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 7.4
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 27 9.8
SB_39329| Best HMM Match : Metallothio_Pro (HMM E-Value=3.7) 27 9.8
>SB_46610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 51.2 bits (117), Expect = 5e-07
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Frame = +2
Query: 200 MGITRMGDVIAILRHSKQVHENAARDK---VLSNTSVNKVPVAAITGRSTLPQ----PSS 358
MGIT MGD+IAILRH+K+VH + R+K S+ S K P + GR T P+ +
Sbjct: 1 MGITVMGDIIAILRHAKEVHAQSEREKAAEAFSSESEVKTP-SRTPGRRTPPELQARKET 59
Query: 359 PASRILEHYTRN 394
PASR+++ + N
Sbjct: 60 PASRMVDSWISN 71
>SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21)
Length = 239
Score = 34.7 bits (76), Expect = 0.049
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 125 YALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQV 256
Y FT++ I+ LL L + L+D+G+T++G + IL KQ+
Sbjct: 162 YCELFTKHDIRGPELLSLTRNDLKDLGVTKVGHIKRILSGVKQL 205
>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 95 AGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAI 235
AGI S A Y F +N+I +L + L+ GI MGD I I
Sbjct: 37 AGIASADIAKYLAIFEQNKIDDAVLPHMTMAQLQSAGIQAMGDRIKI 83
>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 95 AGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAI 235
AGI S A Y F +N+I +L + L+ GI MGD I I
Sbjct: 37 AGIASADIAKYLAIFEQNKIDDAVLPHMTMAQLQSAGIQAMGDRIKI 83
>SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1219
Score = 31.1 bits (67), Expect = 0.60
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 167 LLDLNKEYLRDMGITRMGDVIAILRHSKQVHENAAR 274
+L+ +K + + + + GD++ +L+ KQ+HEN AR
Sbjct: 135 VLESSKRFYLVLELAQNGDLLQLLQKKKQLHENEAR 170
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 449 PNDNIDESEKNLKKARLIRFGSTGLT 526
PND IDE +NL+ A ++ F S GLT
Sbjct: 2212 PNDGIDEPARNLRSACVLMF-SLGLT 2236
>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
Length = 527
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +2
Query: 125 YALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQVHE 262
Y F EN+I +L D+++ +L+D + ++ + +AIL+ K +++
Sbjct: 471 YVEVFRENQIDGMLLSDMDETFLKD--VFKVENKLAILKLKKAIND 514
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +2
Query: 86 FTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHS---KQV 256
F A IPS + FT + + + DL E +R G+ GD+ +L+ S K +
Sbjct: 1108 FEPARIPSPKRVSLERQFTRSVLLNWKAPDLPSEEIRGYGVYVNGDMRMMLKGSNRTKAL 1167
Query: 257 HENAARDKVLSN 292
EN DK + N
Sbjct: 1168 IENIDPDKSIRN 1179
>SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)
Length = 660
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 86 RNLPTYRLGLNPFCCFLHSFYNKYQR 9
++LP ++ +P C LH F YQR
Sbjct: 576 KDLPAFKETFSPVLCHLHRFVPPYQR 601
>SB_41643| Best HMM Match : uDENN (HMM E-Value=3.5)
Length = 426
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 67 RYVGKFLHNSWYTIRCGCYICTYIY 141
RY+ L+N WY C +C +Y
Sbjct: 219 RYLPSMLYNRWYPYECYNLLCELLY 243
>SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 2629
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 174 SNSISLWILFSVNVSAYVAATSDGIPAVVKKLTHIP 67
S I LW +F++ S Y S GIP ++++ +P
Sbjct: 346 SYGIVLWEIFTIGDSPYPGVKSKGIPRMLREGYRMP 381
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +2
Query: 5 RAVDIYYKMNVKNNKMDSNLTGMWVSFFTTAGIPSDVAATYALTFTENR 151
RA+ +K + ++ + G+W+ + T+G+P +A +T ++ R
Sbjct: 763 RAIVTPFKKRISIRQVQFIIAGLWLGSYVTSGLP--IAPLLRVTISQGR 809
>SB_39329| Best HMM Match : Metallothio_Pro (HMM E-Value=3.7)
Length = 297
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 140 TENRIQSDMLLDLNKEYLRDMGITRMGDVI---AILRHSKQVHENAARDK 280
++NR + ++ + + E LR MG+ + GD + A S + + ++DK
Sbjct: 20 SQNRCRISLVCNADDEMLRSMGLVKAGDRLNLKAFCESSNKPEKEGSKDK 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,234,877
Number of Sequences: 59808
Number of extensions: 326706
Number of successful extensions: 820
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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