Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1053
         (539 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    23   5.0  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    23   5.0  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   8.7  

>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
           protein.
          Length = 1087

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 437 KAVQPNDNIDESEKNLKKARLIRFGSTGLTQ 529
           K V+PND++    +   KA ++R   T L Q
Sbjct: 156 KPVEPNDSVALDNQRKMKALILRNVCTSLKQ 186


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = +2

Query: 101 IPSDV--AATYALTFTENRIQSDMLLDLNKEYLRDMG--ITRMGDVIAILRHSKQVHENA 268
           IPS V  A T        ++     L L  EY+R +   +   G  +   +  +Q+  +A
Sbjct: 128 IPSTVVTALTNGARGANKKLSKVDTLRLAVEYIRSLQRMLDENGGELPSNKQQQQL-TSA 186

Query: 269 ARDKVLSNTSVNKVPVAAITGRSTLPQPSSPASRILEH 382
           +    LSN+S+      + T   T+ +PS+ +S    H
Sbjct: 187 SSSNQLSNSSLCSASSGSSTYYGTMSEPSNASSPAPSH 224


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 103 YTSCCEETYP 74
           + SCCEE YP
Sbjct: 218 FYSCCEEPYP 227


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,048
Number of Sequences: 2352
Number of extensions: 11641
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 50320221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)