BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1053 (539 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81547-4|CAB04458.1| 368|Caenorhabditis elegans Hypothetical pr... 66 1e-11 Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 28 4.9 >Z81547-4|CAB04458.1| 368|Caenorhabditis elegans Hypothetical protein F53F8.5 protein. Length = 368 Score = 66.5 bits (155), Expect = 1e-11 Identities = 42/144 (29%), Positives = 66/144 (45%) Frame = +2 Query: 74 WVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQ 253 W FF AGIPS++A YA +F NRI +ML +L+K L ++G++ +GD + ILR K Sbjct: 4 WTQFFVRAGIPSEIAKKYAKSFATNRITKEMLPELDKSTLSELGVSAIGDQLCILRRIKA 63 Query: 254 VHENAARDKVLSNTSVNKVPVAAITGRSTLPQPSSPASRILEHYTRNXXXXXXXXXXXLK 433 R+ + + AA R T P +S + R +K Sbjct: 64 AKSAIEREAEEAIQEEPQSKPAANKARITAPGALLASSSSSSEHRRGKPPPDRHEIYHVK 123 Query: 434 RKAVQPNDNIDESEKNLKKARLIR 505 P+ N + + L+KA ++R Sbjct: 124 ----MPDGNTHRTRQILQKAEVMR 143 >Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical protein T20D3.11 protein. Length = 1843 Score = 27.9 bits (59), Expect = 4.9 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Frame = +2 Query: 23 YKMNVKNNKMDSNLTGMWVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYL-RD 199 Y+M + + D+ GM + A + + +Y T + ++S M + K Y D Sbjct: 1493 YEMEAQGSNHDNAELGM-IKPDQLASLNQALTDSYTTRDTNSILRSRMSVSYLKGYTYED 1551 Query: 200 MGITRMGDVIAILRHSKQVHENAARDKVLSNTSVN 304 + I R I Q NA DK+ NTSVN Sbjct: 1552 ILIVRFRPESEIYWPISQDSRNAMIDKLSRNTSVN 1586 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,873,819 Number of Sequences: 27780 Number of extensions: 241128 Number of successful extensions: 575 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 566 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 575 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1081316076 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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