Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1053
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.1  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 103 YTSCCEETYP 74
           Y SCC E YP
Sbjct: 192 YYSCCPEPYP 201


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 103 YTSCCEETYP 74
           Y  CC+E YP
Sbjct: 214 YYPCCDEPYP 223


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 275 DKVLSNTSVNKVPVAAITGR 334
           D++  +++V  +PV+ I+GR
Sbjct: 47  DEMKKDSAVKGIPVSCISGR 66


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 275 DKVLSNTSVNKVPVAAITGR 334
           D++  +++V  +PV+ I+GR
Sbjct: 47  DEMKKDSAVKGIPVSCISGR 66


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 275 DKVLSNTSVNKVPVAAITGR 334
           D++  +++V  +PV+ I+GR
Sbjct: 47  DEMKKDSAVKGIPVSCISGR 66


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 100 YTIRCGCYICTYIYREQ 150
           Y + CG +  TYI+ +Q
Sbjct: 542 YCVACGLHRDTYIHAQQ 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,843
Number of Sequences: 438
Number of extensions: 2935
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)