Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1053
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15760.1 68414.m01891 expressed protein preedicted by genemar...    36   0.023
At1g80520.1 68414.m09437 expressed protein                             34   0.053
At2g32640.2 68415.m03985 expressed protein                             34   0.070
At2g32640.1 68415.m03984 expressed protein                             34   0.070
At2g33350.1 68415.m04088 hypothetical protein                          28   3.5  
At1g10470.1 68414.m01179 two-component responsive regulator / re...    28   3.5  
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom...    27   8.0  
At2g21480.1 68415.m02556 protein kinase family protein contains ...    27   8.0  
At1g12480.1 68414.m01443 C4-dicarboxylate transporter/malic acid...    27   8.0  

>At1g15760.1 68414.m01891 expressed protein preedicted by
           genemark.hmm; expression supported by MPSS
          Length = 202

 Score = 35.5 bits (78), Expect = 0.023
 Identities = 20/90 (22%), Positives = 47/90 (52%)
 Frame = +2

Query: 74  WVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQ 253
           W S+ +   +   +   Y L+F++N ++ + +   + E+L+ MGI+     + IL+ +++
Sbjct: 5   WFSWLSRTNLEPSLIHEYGLSFSQNELEHEDISYFDHEFLQSMGISIAKHRLEILKLARR 64

Query: 254 VHENAARDKVLSNTSVNKVPVAAITGRSTL 343
             +N+     L++ S+++V  A    R  L
Sbjct: 65  DRKNS---PPLTSRSISRVVTAIKKTRKCL 91


>At1g80520.1 68414.m09437 expressed protein
          Length = 192

 Score = 34.3 bits (75), Expect = 0.053
 Identities = 17/69 (24%), Positives = 36/69 (52%)
 Frame = +2

Query: 74  WVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQ 253
           W S+ +   + + +   Y L+F+ N ++ + +   N E+L+ MG       I+I +H  +
Sbjct: 3   WFSWLSRTNLEASLIYEYGLSFSNNELEYEDIAYFNHEFLQSMG-------ISIAKHRLE 55

Query: 254 VHENAARDK 280
           + + A RD+
Sbjct: 56  ILKLARRDR 64


>At2g32640.2 68415.m03985 expressed protein
          Length = 385

 Score = 33.9 bits (74), Expect = 0.070
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = +2

Query: 14  DIYYKMNVKNNKMDSNLTGMWVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYL 193
           D+ Y  +      DSN+   W +F   +G P D   TY  T+TE +  S  L DL +EY 
Sbjct: 295 DVIYSSSSVTRVADSNVQLFWEAFPAGSG-PLD-RTTYMFTYTEPQSTSPSLEDLLEEYW 352

Query: 194 RDM 202
           + M
Sbjct: 353 KLM 355


>At2g32640.1 68415.m03984 expressed protein
          Length = 585

 Score = 33.9 bits (74), Expect = 0.070
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = +2

Query: 14  DIYYKMNVKNNKMDSNLTGMWVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYL 193
           D+ Y  +      DSN+   W +F   +G P D   TY  T+TE +  S  L DL +EY 
Sbjct: 295 DVIYSSSSVTRVADSNVQLFWEAFPAGSG-PLD-RTTYMFTYTEPQSTSPSLEDLLEEYW 352

Query: 194 RDM 202
           + M
Sbjct: 353 KLM 355


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 83  NLPTYRLGLNPFCCFLHS 30
           ++P+Y LGLNP C F  S
Sbjct: 214 SVPSYNLGLNPSCSFFRS 231


>At1g10470.1 68414.m01179 two-component responsive regulator /
           response regulator 4 (ARR4) identical to responce
           regulator1 GI:3273195 from [Arabidopsis thaliana];
           identical to cDNA ARR4 mRNA for response regulator 4
           GI:3953596
          Length = 259

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 248 KQVHENAARDKVLSNTSVNKVPVAAITGRSTLPQPSSP 361
           K++  +  +D  LSN +  K+P  + +  S+LP PS P
Sbjct: 155 KRLRSHLTKDVKLSNGNKRKLPEDSSSVNSSLPPPSPP 192


>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to SP|P40748
           Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 1027

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 179 NKEYLRDMGITRMGD--VIAILRHSKQVHENAARDKVLSNTSVNKVPVAAITGRSTLP 346
           N+E++  +     GD  V++IL H +Q H++     ++    +    VAA   ++ LP
Sbjct: 43  NEEFVFRISDVDEGDDVVVSILHHEQQDHQSIVSTGLIGKVRIPLTSVAAEENQTLLP 100


>At2g21480.1 68415.m02556 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 871

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 191 LRDMGITR--MGDVIAILRHSKQVHENAARDKVLSNTSVNKVPVAAITGRSTLPQPSSPA 364
           L D G+ R  MGDV+  L ++ Q+ E  ++ K  +       PVA      T P  ++ A
Sbjct: 777 LADYGVDRPTMGDVLWNLEYALQLQEAFSQGKAEAEEVETPKPVAVPAAAPTSPAATTAA 836

Query: 365 S 367
           +
Sbjct: 837 A 837


>At1g12480.1 68414.m01443 C4-dicarboxylate transporter/malic acid
           transport family protein contains Pfam profile PF03595:
           C4-dicarboxylate transporter/malic acid transport
           protein
          Length = 556

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 502 NETCFLQVLFTFINIVIRLNCF 437
           + TCF   LF +I++V R+N F
Sbjct: 415 SRTCFFIALFLYISLVARINFF 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,125,238
Number of Sequences: 28952
Number of extensions: 216264
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)