Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1052
         (669 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IHP9 Cluster: Putative uncharacterized protein; n=3; ...    36   0.88 
UniRef50_A4XGP0 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_Q54KE1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  

>UniRef50_Q8IHP9 Cluster: Putative uncharacterized protein; n=3;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 2940

 Score = 35.9 bits (79), Expect = 0.88
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = -2

Query: 458  NVQNITDTN*FINKNKSLNQQVYTYIYNTNTIIKLII*EVIHHTMQSLDTLSY 300
            ++ N+T  N  IN NK  N Q Y Y+YN N I+       I+H  +  +TL+Y
Sbjct: 2502 HIFNVTQNNAHINDNKEYNYQKYPYVYN-NQILS------INHGKKETNTLNY 2547


>UniRef50_A4XGP0 Cluster: Putative uncharacterized protein; n=1;
           Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
           Putative uncharacterized protein - Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903)
          Length = 311

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +1

Query: 40  FYNDF*ISLFVYDTVRLNF*DWFRCAAAVN---RLT*TVFVLKSNYWLLAD-WCSYYVIF 207
           +Y D   + ++Y     N  DW     A+    +    VF  K  YW++ D WC   V F
Sbjct: 156 WYKDEANNSYIYVAESKNLKDWNVLGPALTDRPQEGPNVFFWKGKYWMITDPWCGLGVYF 215

Query: 208 SRKPHVYYDKSNFV 249
           S   +++Y + N +
Sbjct: 216 SEDANIWYRQENIL 229


>UniRef50_Q54KE1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 292

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 23  KI*FGNFIMIFKFLYSCMTRFD*IFETGFGVQQPSIV 133
           KI FG +IMIF+FLY+C T    I    F  Q P ++
Sbjct: 169 KILFGKYIMIFRFLYTCGTILMYISAYLFVFQFPKLI 205


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,193,815
Number of Sequences: 1657284
Number of extensions: 10366158
Number of successful extensions: 21259
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21243
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)