Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1052
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   2.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.0  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   5.2  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 32  FGNFIMIFKFLYSCMTRFD*IFETGF 109
           F NF+ +      C+T+F   +++GF
Sbjct: 234 FQNFLFVLSTFSICITQFYYCYDSGF 259



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 524 ISRCEKLFGLSDISLNTRHFFPLPNL 601
           I R +K FGL   S+N R      NL
Sbjct: 103 IQRIDKQFGLLGYSINYRRISIFVNL 128


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 444 NVLNIGRSPNRI*KK-KCPHDFDL 512
           NV+ IGRSP++  KK    H  DL
Sbjct: 605 NVIGIGRSPDQNVKKINLKHALDL 628


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 444 NVLNIGRSPNRI*KK-KCPHDFDL 512
           NV+ IGRSP++  KK    H  DL
Sbjct: 605 NVVGIGRSPDQNVKKINLKHALDL 628


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 327 YAIFGYIILRDALVTYFS*HVYRLANYKITFI 232
           Y ++   ++    VT+FS  +  L NY ++ I
Sbjct: 30  YRLYKIFVVFSFAVTFFSAWICALVNYNVSEI 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,002
Number of Sequences: 336
Number of extensions: 2964
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)