Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1052
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    27   2.4  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.5  

>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 211 Y*KLRN-KNTNQPGANNLTSK-QKLFKSND*RLLHTETSLKNSIEPCHTRIEKFKNHYKI 38
           Y +L N K   Q     +T++ +  F++ + +++ T  +L + +   H RI   +   + 
Sbjct: 310 YERLNNEKRAIQQKITQMTNETESFFQAKEEKMIETRDALNSELSEYHERIRALETQIES 369

Query: 37  AKSY 26
            KSY
Sbjct: 370 LKSY 373


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = -3

Query: 295 CSCYVFFITRISPR*LQNYFYRNTHEVFY 209
           C CY+ ++ +++   L N+F ++ +  F+
Sbjct: 166 CQCYIHYLPKLAVCILSNFFLQDAYISFF 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,622
Number of Sequences: 5004
Number of extensions: 47553
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)