BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1052 (669 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 27 2.4 SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.5 >SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pombe|chr 3|||Manual Length = 380 Score = 27.1 bits (57), Expect = 2.4 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = -3 Query: 211 Y*KLRN-KNTNQPGANNLTSK-QKLFKSND*RLLHTETSLKNSIEPCHTRIEKFKNHYKI 38 Y +L N K Q +T++ + F++ + +++ T +L + + H RI + + Sbjct: 310 YERLNNEKRAIQQKITQMTNETESFFQAKEEKMIETRDALNSELSEYHERIRALETQIES 369 Query: 37 AKSY 26 KSY Sbjct: 370 LKSY 373 >SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 601 Score = 25.4 bits (53), Expect = 7.5 Identities = 7/29 (24%), Positives = 18/29 (62%) Frame = -3 Query: 295 CSCYVFFITRISPR*LQNYFYRNTHEVFY 209 C CY+ ++ +++ L N+F ++ + F+ Sbjct: 166 CQCYIHYLPKLAVCILSNFFLQDAYISFF 194 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,491,622 Number of Sequences: 5004 Number of extensions: 47553 Number of successful extensions: 96 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 96 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 305854096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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