Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1052
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28497| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0)                       31   0.85 
SB_49444| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  

>SB_28497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 270 HVYRLAN-YKITFIVIHMRFSTENYVIRTPISQEP 169
           H++ L   Y + FI+I+ R+  E +  R P  QEP
Sbjct: 128 HLFELCRTYDLRFIIINDRYDREKFQARVPTGQEP 162


>SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0)
          Length = 535

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 270 HVYRLAN-YKITFIVIHMRFSTENYVIRTPISQEP 169
           H++ L   Y + FI+I+ R+  E +  R P  QEP
Sbjct: 251 HLFELCRTYDLRFIIINDRYDREKFQARVPTGQEP 285


>SB_49444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 118 LHTETSLKNSIEPCHTRIEKFKNHYKIAKSYFILIT 11
           L TE     SI PCH    +  NH+ +A+ +F L T
Sbjct: 132 LTTEILAPKSIVPCHGNSGQKNNHHALARKFFPLKT 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,457,213
Number of Sequences: 59808
Number of extensions: 312611
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)