Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1052
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.0  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 329 TMQSLDTLSYAMLLLRIFHNTYIAS 255
           T++ +D   Y M L  + HN Y  S
Sbjct: 244 TLKEVDNKVYGMALSPVTHNLYYNS 268


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 151 VLKSNYWLLADWCSY 195
           ++KSN WL   W  Y
Sbjct: 72  IMKSNVWLRFIWTDY 86


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 515 HLYISRCEKLFGLSDISLNTRHFF 586
           H Y    + ++ + DI LNT +FF
Sbjct: 212 HDYNLENKLIYFIEDIGLNTYYFF 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,285
Number of Sequences: 438
Number of extensions: 3452
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)