Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1052
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23520.1 68418.m02760 expressed protein                             28   6.5  
At4g10770.1 68417.m01757 oligopeptide transporter OPT family pro...    27   8.5  
At2g25300.1 68415.m03026 galactosyltransferase family protein co...    27   8.5  

>At5g23520.1 68418.m02760 expressed protein 
          Length = 435

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 186 PISQEPII*LQNKNCSSQTIDGCCTPKP 103
           P S+ P +  +NK+C +Q   GCC  KP
Sbjct: 67  PPSRFPAL-TENKDCGNQERGGCCRRKP 93


>At4g10770.1 68417.m01757 oligopeptide transporter OPT family
           protein similar to oligopeptide transporter Opt1p
           [Candida albicans] GI:2367386; contains Pfam profile
           PF03169: OPT oligopeptide transporter protein
          Length = 766

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +1

Query: 169 WLLADWCSYYVIFSRKPHVYYDKSNFVISEAI 264
           W+LA + S +V+F  +P++ + + N+V+S A+
Sbjct: 684 WVLAGFLSGFVVFRYRPNL-WQRYNYVLSGAL 714


>At2g25300.1 68415.m03026 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 341

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 137 LEQFLF*SQIIGSWLIGVLIT*FSVENLMCITIK 238
           L+ + F    IGSW+IGV  T      L C +I+
Sbjct: 305 LKTYAFDDTSIGSWMIGVQATYIDDNRLCCSSIR 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,310,500
Number of Sequences: 28952
Number of extensions: 223237
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)