Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1051
         (671 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0U9E9 Cluster: Putative uncharacterized protein; n=1; ...    34   2.7  
UniRef50_Q05454 Cluster: N1890 protein; n=1; Saccharomyces cerev...    33   4.8  

>UniRef50_Q0U9E9 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 328

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -1

Query: 479 IYSSKKRACNSSNNEIGYHLKRTMAFINVSTRTSVSQSASVDVRAFDYIISLLEVLRNSE 300
           +  SK     S N  +G    R    +   T TS+  S +  +  F+     LE LRN  
Sbjct: 182 VKDSKSIRWKSGNAALGVERYRRHNILTYPTPTSLQNSLNAYLSQFN----TLETLRNKH 237

Query: 299 RHAGRSYGPNDGFISIT 249
           R   RS    +GF+++T
Sbjct: 238 RKTARSVPDEEGFVTVT 254


>UniRef50_Q05454 Cluster: N1890 protein; n=1; Saccharomyces
           cerevisiae|Rep: N1890 protein - Saccharomyces cerevisiae
           (Baker's yeast)
          Length = 117

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -1

Query: 476 YSSKKRACNSSNNEIGYHLKRTMAFINVSTRTSVSQSASVDVRAF 342
           +SS + +C+SS N   Y L  ++  +  +++ S+  ++ V ++AF
Sbjct: 52  FSSSENSCSSSGNSSSYPLDASVPLLRFNSKVSIQWASGVTIKAF 96


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,610,806
Number of Sequences: 1657284
Number of extensions: 12002403
Number of successful extensions: 26142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26137
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)