BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1051 (671 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 27 3.3 SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 25 9.9 SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 25 9.9 SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 9.9 >SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1072 Score = 26.6 bits (56), Expect = 3.3 Identities = 13/70 (18%), Positives = 31/70 (44%) Frame = -1 Query: 560 FFLLLSDVFDGTFPICPESTAIAMGNRIYSSKKRACNSSNNEIGYHLKRTMAFINVSTRT 381 FF +L P+ + +++ N+I +SK+R + + F + ++ Sbjct: 538 FFSILRIRSSEVRPLKSQKNTVSINNKIDTSKRRRKGKRRKRVSDEHSASSNFNEIESQA 597 Query: 380 SVSQSASVDV 351 S Q+ ++D+ Sbjct: 598 SFEQNQTLDI 607 >SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 192 Score = 25.0 bits (52), Expect = 9.9 Identities = 9/33 (27%), Positives = 17/33 (51%) Frame = -2 Query: 565 SNFFYYCQTCLTERFLFAQNPRPLRWAIVFTQA 467 S F +C++ + F +NPR + W + +A Sbjct: 26 SKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKA 58 >SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharomyces pombe|chr 2|||Manual Length = 302 Score = 25.0 bits (52), Expect = 9.9 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = +2 Query: 410 WSVSGDSRFRYWS 448 WS SGDS+ + WS Sbjct: 30 WSASGDSKIKKWS 42 >SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1133 Score = 25.0 bits (52), Expect = 9.9 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -1 Query: 509 ESTAIAMGNRIYSSKKRACNSSNNEIG 429 +S +++ + YS+ R CNS ++EIG Sbjct: 248 KSKLLSINSSCYSNIVRFCNSDHHEIG 274 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,687,497 Number of Sequences: 5004 Number of extensions: 54294 Number of successful extensions: 123 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 123 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 307866294 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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