Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1051
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    27   3.3  
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    25   9.9  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   9.9  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   9.9  

>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/70 (18%), Positives = 31/70 (44%)
 Frame = -1

Query: 560 FFLLLSDVFDGTFPICPESTAIAMGNRIYSSKKRACNSSNNEIGYHLKRTMAFINVSTRT 381
           FF +L        P+  +   +++ N+I +SK+R        +      +  F  + ++ 
Sbjct: 538 FFSILRIRSSEVRPLKSQKNTVSINNKIDTSKRRRKGKRRKRVSDEHSASSNFNEIESQA 597

Query: 380 SVSQSASVDV 351
           S  Q+ ++D+
Sbjct: 598 SFEQNQTLDI 607


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 565 SNFFYYCQTCLTERFLFAQNPRPLRWAIVFTQA 467
           S  F +C++   + F   +NPR + W   + +A
Sbjct: 26  SKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKA 58


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 410 WSVSGDSRFRYWS 448
           WS SGDS+ + WS
Sbjct: 30  WSASGDSKIKKWS 42


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 509 ESTAIAMGNRIYSSKKRACNSSNNEIG 429
           +S  +++ +  YS+  R CNS ++EIG
Sbjct: 248 KSKLLSINSSCYSNIVRFCNSDHHEIG 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,497
Number of Sequences: 5004
Number of extensions: 54294
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)