Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1051
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0440 + 29401405-29401407,29401721-29401920,29402406-294024...    32   0.48 
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149           29   4.5  

>01_06_0440 +
           29401405-29401407,29401721-29401920,29402406-29402490,
           29403038-29403121,29403853-29404147,29404228-29404322,
           29406118-29406858
          Length = 500

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
 Frame = -1

Query: 542 DVFDGTFPICPESTAIAMGNRIYSSKKRACNSSNNEIGYHLKRTMAFINVSTRTSVSQ-- 369
           DV D      PE+  +      Y+      N++N      LK   ++ NVST+T + Q  
Sbjct: 382 DVVDSYLVESPETHEVTDFCSFYTLPSSVLNNANYAT---LKAAYSYYNVSTKTPLQQLM 438

Query: 368 -SASVDVRAFDY-IISLLEVLRNSERHAGRSYGPNDG 264
             A +  +  +Y + + L+V+ N        +GP DG
Sbjct: 439 NDALIVAKQKNYDVFNALDVMENESFLKELKFGPGDG 475


>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
          Length = 916

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = +2

Query: 470 LSKYDCPSQWPWILGK*ETFRQTRLTIIKKIATSYNTLNSIKTACLQ 610
           +   +C   + WI+G  ++ RQT+   ++ + T ++   ++ TA L+
Sbjct: 612 MDSMECLGLFLWIVGAPQSVRQTQDRFVRSLKTVHSKFKAVLTALLK 658


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,535,748
Number of Sequences: 37544
Number of extensions: 315786
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)