BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1051 (671 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_0440 + 29401405-29401407,29401721-29401920,29402406-294024... 32 0.48 08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 29 4.5 >01_06_0440 + 29401405-29401407,29401721-29401920,29402406-29402490, 29403038-29403121,29403853-29404147,29404228-29404322, 29406118-29406858 Length = 500 Score = 31.9 bits (69), Expect = 0.48 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%) Frame = -1 Query: 542 DVFDGTFPICPESTAIAMGNRIYSSKKRACNSSNNEIGYHLKRTMAFINVSTRTSVSQ-- 369 DV D PE+ + Y+ N++N LK ++ NVST+T + Q Sbjct: 382 DVVDSYLVESPETHEVTDFCSFYTLPSSVLNNANYAT---LKAAYSYYNVSTKTPLQQLM 438 Query: 368 -SASVDVRAFDY-IISLLEVLRNSERHAGRSYGPNDG 264 A + + +Y + + L+V+ N +GP DG Sbjct: 439 NDALIVAKQKNYDVFNALDVMENESFLKELKFGPGDG 475 >08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 Length = 916 Score = 28.7 bits (61), Expect = 4.5 Identities = 11/47 (23%), Positives = 26/47 (55%) Frame = +2 Query: 470 LSKYDCPSQWPWILGK*ETFRQTRLTIIKKIATSYNTLNSIKTACLQ 610 + +C + WI+G ++ RQT+ ++ + T ++ ++ TA L+ Sbjct: 612 MDSMECLGLFLWIVGAPQSVRQTQDRFVRSLKTVHSKFKAVLTALLK 658 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,535,748 Number of Sequences: 37544 Number of extensions: 315786 Number of successful extensions: 622 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 614 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 622 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1703141568 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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