Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1051
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    31   0.75 
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    31   0.75 
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    31   0.75 
U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm recept...    29   4.0  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 163 MNIRRCNQTNDVKHSRVLYHFRNHIDAK 80
           +N + CN   + KH  + YH+RNHI +K
Sbjct: 545 LNCQHCNFVTEYKH-HLEYHYRNHIGSK 571


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 163 MNIRRCNQTNDVKHSRVLYHFRNHIDAK 80
           +N + CN   + KH  + YH+RNHI +K
Sbjct: 567 LNCQHCNFVTEYKH-HLEYHYRNHIGSK 593


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 163 MNIRRCNQTNDVKHSRVLYHFRNHIDAK 80
           +N + CN   + KH  + YH+RNHI +K
Sbjct: 567 LNCQHCNFVTEYKH-HLEYHYRNHIGSK 593


>U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm receptor
           protein 1 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -2

Query: 394 SVHVLVFH--NQRLSMLELLITSLAC*RFFEIQSDTQDVATVLTMVSFQLPLPNVNLIFV 221
           SV+ +++   N  ++M +L++TS+   R+   Q++  +   +  ++ F L     +++F+
Sbjct: 211 SVYSIIYFAVNSYVAMNKLVLTSVNSQRYKANQTELLNALVIQAIIPFALMHFPASIVFI 270

Query: 220 ITIVRCTNYTY 188
                C N T+
Sbjct: 271 TPFFNCGNQTF 281


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 127 KHSRVLYHFRNHIDAKGTYISILVGRPNNT 38
           ++S  L H +NHI+      SILV   NNT
Sbjct: 707 EYSGKLVHLKNHIEVASVLESILVEVSNNT 736


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,879,791
Number of Sequences: 27780
Number of extensions: 303005
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)