Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1051
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04160.1 68414.m00406 myosin family protein contains Pfam pro...    30   1.6  
At5g14090.1 68418.m01648 hypothetical protein                          29   2.1  
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi...    29   3.7  
At3g58880.1 68416.m06562 F-box family protein contains F-box dom...    28   6.5  
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           27   8.6  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    27   8.6  

>At1g04160.1 68414.m00406 myosin family protein contains Pfam
           profiles: PF02736 myosin N-terminal SH3-like domain,
           PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif, PF01843: DIL domain
          Length = 1500

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 404 FINVSTRTSVSQSASVDVRAFDYIISLLEVLRNSERHAGRSYGPND 267
           F  VS  +  S+ +S+  R    ++SLLE+L  +E H  R   PN+
Sbjct: 590 FPPVSDDSKQSKFSSIGTRFKQQLVSLLEILNTTEPHYIRCIKPNN 635


>At5g14090.1 68418.m01648 hypothetical protein 
          Length = 361

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 479 IYSSKKRACNSSNNEIGYHLKRTMAFINVSTRTSVSQSASVD 354
           IY  KK+  NS++    + +K+ +  I+ S+R SVS    VD
Sbjct: 231 IYGKKKKQPNSAHKSAKHLVKKVLKKIHPSSRGSVSGKPEVD 272


>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
           to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
           thaliana]
          Length = 1505

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 404 FINVSTRTSVSQSASVDVRAFDYIISLLEVLRNSERHAGRSYGPND 267
           F  +S  +  S+ +S+  R    ++SLLE+L  +E H  R   PN+
Sbjct: 589 FPPMSDDSKQSKFSSIGTRFKQQLVSLLEILNTTEPHYIRCIKPNN 634


>At3g58880.1 68416.m06562 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 454

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 601 RSFNRI*RVVRRSNFFYYCQTCLTERFLFAQNPRP 497
           R F    R +     FYYC  CL E  ++ ++ RP
Sbjct: 390 REFQGTLREMEMIKHFYYCFLCLKEMEIYVKDGRP 424


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 565 SNFFYYCQTCLTERFLFAQNPRPLRWAIVFTQAKSARVTAPIT 437
           +  F +C++   + F   +NPR ++W   F  A    +T   T
Sbjct: 26  AKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTT 68


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 574 VRRSNFFYYCQTCLTE 527
           ++R+N++YYC TC  E
Sbjct: 48  LKRNNYYYYCATCNLE 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,733,187
Number of Sequences: 28952
Number of extensions: 268662
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)