Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1050
         (704 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D57398 Cluster: PREDICTED: similar to Protein ti...    48   2e-04
UniRef50_P48613 Cluster: Protein tipE; n=5; Diptera|Rep: Protein...    46   7e-04
UniRef50_Q483E0 Cluster: Putative polysaccharide biosynthesis pr...    35   1.7  
UniRef50_A6F692 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_UPI0000D57398 Cluster: PREDICTED: similar to Protein tipE
           (Temperature-induced paralytic E); n=1; Tribolium
           castaneum|Rep: PREDICTED: similar to Protein tipE
           (Temperature-induced paralytic E) - Tribolium castaneum
          Length = 405

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 24/54 (44%), Positives = 30/54 (55%)
 Frame = +3

Query: 468 TMADEEKIPPTFLEKLLFYTTXXXXXXXXXXXXXXXXXXPFVIEPAFTTIFMQF 629
           TM +  +I  T+ +KLLFYTT                  PFVI+PAFTTIFM+F
Sbjct: 69  TMEEAPEIKQTWQQKLLFYTTAFFVLLGTFSLFSFLFLVPFVIDPAFTTIFMEF 122


>UniRef50_P48613 Cluster: Protein tipE; n=5; Diptera|Rep: Protein
           tipE - Drosophila melanogaster (Fruit fly)
          Length = 452

 Score = 46.4 bits (105), Expect = 7e-04
 Identities = 27/53 (50%), Positives = 28/53 (52%)
 Frame = +3

Query: 471 MADEEKIPPTFLEKLLFYTTXXXXXXXXXXXXXXXXXXPFVIEPAFTTIFMQF 629
           M DE+    T  EKLLFYTT                  PFVIEPAFTTIFMQF
Sbjct: 1   MGDEQD-KRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFMQF 52


>UniRef50_Q483E0 Cluster: Putative polysaccharide biosynthesis
           protein; n=1; Colwellia psychrerythraea 34H|Rep:
           Putative polysaccharide biosynthesis protein - Colwellia
           psychrerythraea (strain 34H / ATCC BAA-681)
           (Vibriopsychroerythus)
          Length = 415

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 482 FVGHCGKAALVEFIALVSARLFHCILFIFSLHKTFLLNVRVLFK 351
           FVG   K A V    L+ ++LFHC+  IFS+H  +    ++L K
Sbjct: 313 FVGENFKNASVYVELLILSQLFHCLYMIFSVHLGYSKKTKILSK 356


>UniRef50_A6F692 Cluster: Putative uncharacterized protein; n=1;
           Moritella sp. PE36|Rep: Putative uncharacterized protein
           - Moritella sp. PE36
          Length = 348

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 21/84 (25%), Positives = 38/84 (45%)
 Frame = -1

Query: 488 FLFVGHCGKAALVEFIALVSARLFHCILFIFSLHKTFLLNVRVLFKCPLWHSITFLIVCL 309
           FLF G      ++ F+ L  +R+F   LF    + ++ L +  +F  P +  I  ++   
Sbjct: 245 FLFYGIPSTLLIISFLILDDSRIFRSKLFCLLGNSSYSLYLSHVFTLPFFIKIIVILDFD 304

Query: 308 RKKLRSLLGYLFTQ*YLVLENLYI 237
              L S+L  +F   + V+   YI
Sbjct: 305 EFYLTSILSVIFCYVFAVISYKYI 328


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,287,126
Number of Sequences: 1657284
Number of extensions: 11092574
Number of successful extensions: 21052
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21045
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)