Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1050
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   2.0  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    27   2.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   6.0  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   6.0  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   6.0  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    26   6.0  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 427 AETSAMNSTSAALPQWPTKRKSLRPFLRNSYSTQQPPSFFLPRSAYSP 570
           A  S +NST   L    T+R+  RP + N  ++Q  PS    RSA  P
Sbjct: 173 ARVSRVNSTPIQLYDPSTQRQMARP-MSNLQASQPVPSSTFSRSAVVP 219


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 336 MPQGTLEKNTNI*KKRFVKTKYEQNTMKQPS*NKRYELN*RCLATMADE 482
           +P   L++NT I K R ++++  +NT    S  KR +++   +A +A E
Sbjct: 115 LPMSLLQENTEIPKVRVLESEPFENTFGPKSQRKRPKISFDSVAELAKE 163


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 108  WSY*IIIKMD-HLLAQSEDALKFSLKSV*SFLFYRVHI 218
            WSY    K + H+   SE+  K+S      F+FY   I
Sbjct: 1017 WSYCKFCKKNTHITVMSEETWKYSFGKYLEFMFYNSQI 1054


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = -1

Query: 116 VAPLYLCNTKSL 81
           VAPLY+CN+K+L
Sbjct: 332 VAPLYICNSKAL 343


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 418 NSRAETSAMNSTSAALPQWPTKRKSLRPFLRNSYSTQQP 534
           +SRA  S  +S S+ L + P+KR SL    R +     P
Sbjct: 261 SSRASRSRQSSLSSRLSELPSKRASLEILRRENTFPADP 299


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 330 HIFDCLSAKETSIVTRLLVYTMIL 259
           H+F+CL   ET++    L  T+IL
Sbjct: 147 HVFECLPTTETNVYDYRLTSTIIL 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,250
Number of Sequences: 5004
Number of extensions: 51192
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)