BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1050 (704 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 2.0 SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 27 2.0 SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 6.0 SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 26 6.0 SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 26 6.0 SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 26 6.0 >SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 964 Score = 27.5 bits (58), Expect = 2.0 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = +1 Query: 427 AETSAMNSTSAALPQWPTKRKSLRPFLRNSYSTQQPPSFFLPRSAYSP 570 A S +NST L T+R+ RP + N ++Q PS RSA P Sbjct: 173 ARVSRVNSTPIQLYDPSTQRQMARP-MSNLQASQPVPSSTFSRSAVVP 219 >SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr 1|||Manual Length = 537 Score = 27.5 bits (58), Expect = 2.0 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +3 Query: 336 MPQGTLEKNTNI*KKRFVKTKYEQNTMKQPS*NKRYELN*RCLATMADE 482 +P L++NT I K R ++++ +NT S KR +++ +A +A E Sbjct: 115 LPMSLLQENTEIPKVRVLESEPFENTFGPKSQRKRPKISFDSVAELAKE 163 >SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase Fab1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1932 Score = 25.8 bits (54), Expect = 6.0 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Frame = +3 Query: 108 WSY*IIIKMD-HLLAQSEDALKFSLKSV*SFLFYRVHI 218 WSY K + H+ SE+ K+S F+FY I Sbjct: 1017 WSYCKFCKKNTHITVMSEETWKYSFGKYLEFMFYNSQI 1054 >SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces pombe|chr 1|||Manual Length = 632 Score = 25.8 bits (54), Expect = 6.0 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = -1 Query: 116 VAPLYLCNTKSL 81 VAPLY+CN+K+L Sbjct: 332 VAPLYICNSKAL 343 >SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2|||Manual Length = 479 Score = 25.8 bits (54), Expect = 6.0 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +1 Query: 418 NSRAETSAMNSTSAALPQWPTKRKSLRPFLRNSYSTQQP 534 +SRA S +S S+ L + P+KR SL R + P Sbjct: 261 SSRASRSRQSSLSSRLSELPSKRASLEILRRENTFPADP 299 >SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 268 Score = 25.8 bits (54), Expect = 6.0 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -3 Query: 330 HIFDCLSAKETSIVTRLLVYTMIL 259 H+F+CL ET++ L T+IL Sbjct: 147 HVFECLPTTETNVYDYRLTSTIIL 170 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,652,250 Number of Sequences: 5004 Number of extensions: 51192 Number of successful extensions: 107 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 107 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 327172622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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