Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1050
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0074 - 27509124-27509199,27509613-27512143                       31   1.2  
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...    28   8.3  

>05_07_0074 - 27509124-27509199,27509613-27512143
          Length = 868

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 427 AETSAMNSTSAALP-QWPTKRKSLRPFLRNSYSTQQPPSFFLPRS 558
           A+ +A+N  SA L  ++P +    RPF+  S  +   PSFF P S
Sbjct: 182 ADGTAVNLLSAVLRVRYPGRANLTRPFVTGSLESTDSPSFFEPVS 226


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -1

Query: 422 LFHCILFIFSLHK--TFLLNVRVLFKCPLWHSITFLIVCLRKKLRSLLGYLFTQ 267
           ++HCIL  FSLH    F+++   +FK P  +S T++I     K+  L   L TQ
Sbjct: 98  IYHCILLNFSLHYQILFVISKPDVFKSP--NSDTYVIFG-EAKIEDLSSQLQTQ 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,055,986
Number of Sequences: 37544
Number of extensions: 285992
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)