Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1050
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52586| Best HMM Match : Hexokinase_2 (HMM E-Value=0.85)             29   4.9  
SB_21761| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_52586| Best HMM Match : Hexokinase_2 (HMM E-Value=0.85)
          Length = 356

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 469 QWPTKRKSLRPFLR--NSYSTQQPPSFF 546
           QW   R++L+PFLR  N Y+ ++   FF
Sbjct: 323 QWAVVRRTLKPFLRRTNEYNQEERVDFF 350


>SB_21761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 210 PYRTKTTKLISMKISGHLQIGPADDPF*LLFSSST 106
           P RT++  ++S K++G  + GP   P  L+F  ST
Sbjct: 133 PLRTESAAVVSRKLAGIYEEGPLTWPKVLMFDDST 167


>SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 463 LPQWPTKRKSLRPFLRNSYSTQQPPSFFLPRSAYSPFY 576
           +P +PT R  L PF    + T   P+F+ P S +  +Y
Sbjct: 394 MPAFPTLRLPLHPFASTGFGT---PAFYNPSSYHREYY 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,401,607
Number of Sequences: 59808
Number of extensions: 354514
Number of successful extensions: 785
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)