Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1050
         (704 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27561-1|AAC48307.1|  452|Drosophila melanogaster tipE protein.        46   4e-05
AY060317-1|AAL25356.1|  452|Drosophila melanogaster GH18645p pro...    46   4e-05
AE014296-788|AAN11591.1|  452|Drosophila melanogaster CG1232-PB,...    46   4e-05
AE014296-787|AAF47857.1|  452|Drosophila melanogaster CG1232-PA,...    46   4e-05
DQ139958-1|ABA06529.1|  309|Drosophila melanogaster TipE-like pr...    30   3.5  
AE014296-784|AAF47854.1|  309|Drosophila melanogaster CG15004-PA...    30   3.5  

>U27561-1|AAC48307.1|  452|Drosophila melanogaster tipE protein.
          Length = 452

 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 27/53 (50%), Positives = 28/53 (52%)
 Frame = +3

Query: 471 MADEEKIPPTFLEKLLFYTTXXXXXXXXXXXXXXXXXXPFVIEPAFTTIFMQF 629
           M DE+    T  EKLLFYTT                  PFVIEPAFTTIFMQF
Sbjct: 1   MGDEQD-KRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFMQF 52


>AY060317-1|AAL25356.1|  452|Drosophila melanogaster GH18645p
           protein.
          Length = 452

 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 27/53 (50%), Positives = 28/53 (52%)
 Frame = +3

Query: 471 MADEEKIPPTFLEKLLFYTTXXXXXXXXXXXXXXXXXXPFVIEPAFTTIFMQF 629
           M DE+    T  EKLLFYTT                  PFVIEPAFTTIFMQF
Sbjct: 1   MGDEQD-KRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFMQF 52


>AE014296-788|AAN11591.1|  452|Drosophila melanogaster CG1232-PB,
           isoform B protein.
          Length = 452

 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 27/53 (50%), Positives = 28/53 (52%)
 Frame = +3

Query: 471 MADEEKIPPTFLEKLLFYTTXXXXXXXXXXXXXXXXXXPFVIEPAFTTIFMQF 629
           M DE+    T  EKLLFYTT                  PFVIEPAFTTIFMQF
Sbjct: 1   MGDEQD-KRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFMQF 52


>AE014296-787|AAF47857.1|  452|Drosophila melanogaster CG1232-PA,
           isoform A protein.
          Length = 452

 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 27/53 (50%), Positives = 28/53 (52%)
 Frame = +3

Query: 471 MADEEKIPPTFLEKLLFYTTXXXXXXXXXXXXXXXXXXPFVIEPAFTTIFMQF 629
           M DE+    T  EKLLFYTT                  PFVIEPAFTTIFMQF
Sbjct: 1   MGDEQD-KRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFMQF 52


>DQ139958-1|ABA06529.1|  309|Drosophila melanogaster TipE-like
           protein 2 protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 465 ATMADEEKIP-PTFLEKLLFYTTXXXXXXXXXXXXXXXXXXPFVIEPAFTTIFMQF 629
           A  A  E+I   T LEK  FYT+                  PFV++PA +TI   +
Sbjct: 67  AIKAKREEIEMDTLLEKAKFYTSVCLGTTAILSVFTFLFLIPFVVDPAISTIIADY 122


>AE014296-784|AAF47854.1|  309|Drosophila melanogaster CG15004-PA
           protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 465 ATMADEEKIP-PTFLEKLLFYTTXXXXXXXXXXXXXXXXXXPFVIEPAFTTIFMQF 629
           A  A  E+I   T LEK  FYT+                  PFV++PA +TI   +
Sbjct: 67  AIKAKREEIEMDTLLEKAKFYTSVCLGTTAILSVFTFLFLIPFVVDPAISTIIADY 122


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,794,901
Number of Sequences: 53049
Number of extensions: 519062
Number of successful extensions: 920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)