Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1050
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan pr...    30   1.9  
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL034488-13|CAA22460.2|  345|Caenorhabditis elegans Hypothetical...    28   7.5  

>U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan
           protein 3 protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 276 VYTMILGT*KSLYLKVNVFIYAPYRTKTTKLISMKI 169
           +Y +  G  KSLY  ++ F+ +PY  K +K+++  I
Sbjct: 279 IYFLFFGEMKSLYALMHDFLVSPYSLKLSKMLAKMI 314


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 683 LPTKCLTWVVTHKAPIGSKLHEYRSESWF 597
           +P + +T V+T   P  SK+ EY +  W+
Sbjct: 1   MPEEIVTRVITFFFPYDSKVEEYENSDWY 29


>AL034488-13|CAA22460.2|  345|Caenorhabditis elegans Hypothetical
           protein Y54G11A.12 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 225 VFIYAPYRTKTTKLISMKI 169
           +FIY PYR  T KLI  KI
Sbjct: 301 IFIYKPYRVYTKKLIFYKI 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,088
Number of Sequences: 27780
Number of extensions: 284698
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)