Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1050
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:...    32   0.32 
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    30   1.7  
At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family...    29   3.0  
At3g45900.1 68416.m04967 expressed protein                             27   9.2  
At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CH...    27   9.2  

>At5g20490.1 68418.m02435 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin-like protein
            my5, common sunflower, PIR:T14279
          Length = 1545

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 424  RAETSAMNSTSAALPQWPTKRKSLRPFLRNSYSTQQPPSFFLPRSAYSPFYS*CHL*L-N 600
            RA+ +A+ +  A +  W + RKSL  +L    +   PP  FL R  ++  +S  ++ L N
Sbjct: 1318 RAQANAV-AQQALIAHWQSIRKSLNSYLNLMKANNAPP--FLVRKVFTQIFSFINVQLFN 1374

Query: 601  QLSLRYSC 624
             L LR  C
Sbjct: 1375 SLLLRREC 1382


>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
            from [Arabidopsis thaliana]
          Length = 1529

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 457  AALPQWPTKRKSLRPFLRNSYSTQQPPSFFLPRSAYSPFYS*CHL*L-NQLSLRYSC 624
            A +  W    KSL  FL N  S   PP  FL R  ++  +S  ++ L N L LR  C
Sbjct: 1316 ALIAHWQGIVKSLTNFLNNLKSNHVPP--FLVRKVFTQIFSFINVQLFNSLLLRREC 1370


>At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family
           protein
          Length = 575

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 427 AETSAMNSTSA--ALPQWPTKRKSLRPFLR--NSYSTQQPPSFFLPRSAYSPFY 576
           AET   NS S   +L  +P  + S+    +  N    Q PP+FF P   YSP+Y
Sbjct: 349 AETQPGNSNSPPISLVSYPPDQSSIAAATQQTNFLRQQYPPNFF-PYGYYSPYY 401


>At3g45900.1 68416.m04967 expressed protein 
          Length = 389

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 552 WQEERRRLLCRIGVSQERSEGFSLR 478
           WQEE +RLL RI   +E  E F  R
Sbjct: 102 WQEEEKRLLNRIHEIEEEREDFMNR 126


>At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CHX8)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 847

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 410 ILFIFSLHKTFLLNVRVLFKCPLWHSITFLIVCLRKKLRSLLGYLFT 270
           +L IF L  +  + V  L+K PL  SI   ++   K +  L  YLF+
Sbjct: 419 VLLIFLLKLSVSVIVPYLYKMPLRDSIILALIMSHKGIIELSFYLFS 465


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,465,409
Number of Sequences: 28952
Number of extensions: 250060
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)