BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1049 (686 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 26 4.4 SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 26 5.9 SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 5.9 SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.8 >SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 977 Score = 26.2 bits (55), Expect = 4.4 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -1 Query: 236 HHVVVHNSLPAYNCVFSEINLELNFNGVLVLALQ 135 H V+ NS+ ++ S +ELN++ V V L+ Sbjct: 239 HESVLRNSMDDFHTAISSSEIELNYSNVSVSTLK 272 >SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Manual Length = 918 Score = 25.8 bits (54), Expect = 5.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 510 FSGEKLTKKNNFLIFSTKIIVFFSYGNIRLSTT 608 FS E L+KKN FLI + F N+ +ST+ Sbjct: 833 FSFEPLSKKNRFLINLFRFSFSFILYNLLISTS 865 >SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1522 Score = 25.8 bits (54), Expect = 5.9 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 571 CFFRMATLDYPRLVQVKHLEILSKS 645 CFFR+ Y RL ++K+LE ++ S Sbjct: 1012 CFFRLFHTLYSRLEEIKNLEQMAYS 1036 >SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 224 Score = 25.4 bits (53), Expect = 7.8 Identities = 17/60 (28%), Positives = 27/60 (45%) Frame = +2 Query: 236 VPPRARGPAVRQQGQLHAAPGFR*RASRL*ELHHLRFEESSRPRYPAAHLHVHGIPSSGS 415 VPP + +RQ+G + + + S H S+ P Y A+ L+ + SSGS Sbjct: 6 VPPPSYEEVLRQEGVIDSPNSSNGQTST--SAGHPSSSSSTLPNYAASSLNSRPVSSSGS 63 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,599,038 Number of Sequences: 5004 Number of extensions: 49899 Number of successful extensions: 126 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 126 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 317927284 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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