Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1049
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   4.4  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   5.9  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  

>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 236 HHVVVHNSLPAYNCVFSEINLELNFNGVLVLALQ 135
           H  V+ NS+  ++   S   +ELN++ V V  L+
Sbjct: 239 HESVLRNSMDDFHTAISSSEIELNYSNVSVSTLK 272


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 510 FSGEKLTKKNNFLIFSTKIIVFFSYGNIRLSTT 608
           FS E L+KKN FLI   +    F   N+ +ST+
Sbjct: 833 FSFEPLSKKNRFLINLFRFSFSFILYNLLISTS 865


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 571  CFFRMATLDYPRLVQVKHLEILSKS 645
            CFFR+    Y RL ++K+LE ++ S
Sbjct: 1012 CFFRLFHTLYSRLEEIKNLEQMAYS 1036


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +2

Query: 236 VPPRARGPAVRQQGQLHAAPGFR*RASRL*ELHHLRFEESSRPRYPAAHLHVHGIPSSGS 415
           VPP +    +RQ+G + +      + S      H     S+ P Y A+ L+   + SSGS
Sbjct: 6   VPPPSYEEVLRQEGVIDSPNSSNGQTST--SAGHPSSSSSTLPNYAASSLNSRPVSSSGS 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,038
Number of Sequences: 5004
Number of extensions: 49899
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)