Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1049
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0135 + 18322962-18323136,18323182-18323237,18323749-183238...    31   0.86 
11_06_0296 + 22046649-22048202,22048524-22048703,22048811-220488...    30   2.0  
03_02_0341 - 7643426-7643973,7644340-7644505                           29   3.5  
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295...    28   6.0  
03_01_0020 + 180963-181346,181432-181994,183000-183822                 28   8.0  

>05_04_0135 +
           18322962-18323136,18323182-18323237,18323749-18323885,
           18324679-18324865,18324958-18325080,18325828-18326112
          Length = 320

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 395 HEHEGAQQGSAVGTTLQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHAEV 237
           HE   A  GS   T L  +DD TL  +++ S +  + +  +A  LQ+  H E+
Sbjct: 257 HESSAAIAGSVEVTKLLASDDGTLARDSVISVVDGKVKQDIALRLQNVEHGEL 309


>11_06_0296 +
           22046649-22048202,22048524-22048703,22048811-22048860,
           22049443-22049564,22051007-22051119,22051227-22051436,
           22052152-22052265,22052529-22052658,22053010-22053143,
           22053997-22054077,22054181-22054267
          Length = 924

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
 Frame = -1

Query: 434 WGQRRIRSQNLESHEHEGAQQGSAVGTTLQNADDATLTAETLFSEIQEQHEAVL----AA 267
           W  +   +++ E H+       +A      N  D  ++   + SE++   EA +    A 
Sbjct: 75  WSGKEGSAEDEEEHKRAALSAFAAAAWLAPNCVDIAVSHAEMLSEVERYEEAYVELLRAL 134

Query: 266 GLQDPGHAEVHHVV 225
           G+ DP     H VV
Sbjct: 135 GISDPADPAAHDVV 148


>03_02_0341 - 7643426-7643973,7644340-7644505
          Length = 237

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -1

Query: 377 QQGSAVGTTLQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHAEVHHVVVH 219
           Q+ S +    Q   D   T   L  ++        +A L DP H   HH+V+H
Sbjct: 118 QEPSMIVAAQQPGHDGAKTFVALAGKVHRPSAECASAFLCDPFHKHHHHIVLH 170


>02_05_1044 +
           33728623-33728768,33728814-33728993,33729446-33729523,
           33729834-33729930,33730206-33730339,33730944-33731025,
           33731631-33731717,33731875-33731981,33732674-33732845,
           33733018-33733259,33733482-33733563,33733954-33734019,
           33734040-33734159,33734935-33735012,33735083-33735178,
           33735791-33735897,33736031-33736199,33736402-33736452,
           33736567-33736650,33736946-33737040,33737175-33737265,
           33737342-33737488,33737614-33737676
          Length = 857

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 87  LGHHGDSRRCWPKSWSLTIAGHLASRD 7
           L    D +  WP  W ++ AGH+++ D
Sbjct: 76  LQRRADCKDTWPGQWDISSAGHISAGD 102


>03_01_0020 + 180963-181346,181432-181994,183000-183822
          Length = 589

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 256 TPGTRRYIMLLCTTASQRITVFSVR*ILNSILTGCLSLRS 137
           T G R   M+LC   ++R+T   V   L + LTG + L S
Sbjct: 45  TGGWRSAAMILCVELNERLTTLGVAVNLVTYLTGTMHLGS 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,542
Number of Sequences: 37544
Number of extensions: 324124
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)