Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1049
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20004| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_48047| Best HMM Match : Phage_QLRG (HMM E-Value=5.3)                28   6.2  
SB_50088| Best HMM Match : RanGAP1_C (HMM E-Value=0.001)               28   8.1  
SB_47585| Best HMM Match : Umbravirus_LDM (HMM E-Value=1.7)            28   8.1  
SB_32989| Best HMM Match : Umbravirus_LDM (HMM E-Value=3.4)            28   8.1  

>SB_20004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
 Frame = +3

Query: 144 KDKHPVKIEFKIYLTENTVIRWEAVVHNNMMYLRVPGVLQSGSKDSFMLLLDFAEERLGC 323
           + KHPV +  K ++++   +     VH+    +      Q+G    F L+   A      
Sbjct: 90  EQKHPVLLPRKHHVSQLVALHHHVKVHHQGRLITSGATRQAG----FWLIEGHATVTKAI 145

Query: 324 KSCIICV-LKSRP----------DRATLLRTFMFMGFQVLAP 416
           K C+ C  L+ RP          DR  +   F  +GF V  P
Sbjct: 146 KDCVTCKKLRGRPLEQRMADLPPDRTEVCSPFTNVGFDVFGP 187


>SB_48047| Best HMM Match : Phage_QLRG (HMM E-Value=5.3)
          Length = 418

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 22  VPCYGQAPALWPAAPRVSMMAKRLRNSYNYNNKL*TRSWSARTSTPLKLSSR 177
           VP Y + P    A+P + + + R +NS N + +   R   AR  T ++ SS+
Sbjct: 156 VPVYTRKPRRESASPLIVITSSRAQNSTNNSKRFQGRKLYARPMTYVRNSSQ 207


>SB_50088| Best HMM Match : RanGAP1_C (HMM E-Value=0.001)
          Length = 636

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 547 SFFPQK*SCFFRMATLDYPRLVQVKHLEILSKSV 648
           S+FPQ  +CFF +A L  P     +H E+L K++
Sbjct: 469 SYFPQSLTCFF-VAFLTKPNTRLSQHPELLKKAL 501


>SB_47585| Best HMM Match : Umbravirus_LDM (HMM E-Value=1.7)
          Length = 421

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
 Frame = +3

Query: 144 KDKHPVKIEFKIYLTENTVIRWEAVVHNNMMYLRVPGVLQSGSKDSFMLLLDFAEERLGC 323
           + KHPV +  K ++++   +     VH+    +      Q+G    F L+   A      
Sbjct: 263 EQKHPVLLPRKHHVSQLVALHHHVKVHHQGRLITSGATRQAG----FWLIGGHATVTKAI 318

Query: 324 KSCIICV-LKSRP----------DRATLLRTFMFMGFQVLAP 416
           K C+ C  L+ RP          DR  +   F  +GF V  P
Sbjct: 319 KDCVTCKKLRGRPLEQRMADLPPDRTEVCSPFTNVGFDVFGP 360


>SB_32989| Best HMM Match : Umbravirus_LDM (HMM E-Value=3.4)
          Length = 279

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
 Frame = +3

Query: 144 KDKHPVKIEFKIYLTENTVIRWEAVVHNNMMYLRVPGVLQSGSKDSFMLLLDFAEERLGC 323
           + KHPV +  K ++++   +     VH+    +      Q+G    F L+   A      
Sbjct: 121 EQKHPVLLPRKHHVSQLVALHHHVKVHHQGRLITSGATRQAG----FWLIGGHATVTKAI 176

Query: 324 KSCIICV-LKSRP----------DRATLLRTFMFMGFQVLAP 416
           K C+ C  L+ RP          DR  +   F  +GF V  P
Sbjct: 177 KDCVTCKKLRGRPLEQRMADLPPDRTEVCSPFTNVGFDVFGP 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,686,193
Number of Sequences: 59808
Number of extensions: 381033
Number of successful extensions: 1074
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)