BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1049 (686 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U29529-1|AAB49330.1| 186|Drosophila melanogaster guf protein. 86 4e-17 AF038597-1|AAC97538.1| 254|Drosophila melanogaster ornithine de... 86 4e-17 AE013599-1406|AAF58570.2| 248|Drosophila melanogaster CG16747-P... 86 4e-17 AE013599-1405|AAF58567.2| 270|Drosophila melanogaster CG16747-P... 86 4e-17 AE013599-1404|AAF58569.2| 254|Drosophila melanogaster CG16747-P... 86 4e-17 U92536-1|AAD41441.1| 1487|Drosophila melanogaster RECQ helicase ... 29 4.5 X87141-1|CAA60619.1| 722|Drosophila melanogaster VND (ventral n... 29 6.0 AL031883-2|CAA21410.1| 723|Drosophila melanogaster EG:118B3.1,F... 29 6.0 AE014298-61|AAF45521.1| 723|Drosophila melanogaster CG6172-PA, ... 29 6.0 AE014298-60|ABI30961.1| 577|Drosophila melanogaster CG6172-PB, ... 29 6.0 AY119515-1|AAM50169.1| 494|Drosophila melanogaster GH14048p pro... 29 7.9 AE014297-2491|AAF55530.2| 494|Drosophila melanogaster CG7131-PA... 29 7.9 >U29529-1|AAB49330.1| 186|Drosophila melanogaster guf protein. Length = 186 Score = 86.2 bits (204), Expect = 4e-17 Identities = 47/122 (38%), Positives = 77/122 (63%), Gaps = 5/122 (4%) Frame = +3 Query: 120 VVNKILERKDKHPVKIEFKIYLTENTVIRWEAVVH--NNMMYLRVPGVLQ-SGSKDSFML 290 V+ +IL+ PV+I K+++TE+ W +++ NN++Y+ +P L +GSK +F+ Sbjct: 63 VLRQILQHDQ--PVQITIKLHVTEDQYTNWNTILNPVNNLLYVALPKDLPPAGSKQTFIS 120 Query: 291 LLDFAEERLGCKSCIICVLKSRPDRATLLRTFMFMGFQVLAPNSP-LTPQHIN-NPNYIF 464 LL+FAEE+L ++ + K +PDRA L+ F+FMGF+ L+ +P P IN N NY F Sbjct: 121 LLEFAEEKLEVDGIVMVMPKDQPDRARLIEAFLFMGFEPLSRKAPQAPPAAINDNENYYF 180 Query: 465 LH 470 L+ Sbjct: 181 LY 182 >AF038597-1|AAC97538.1| 254|Drosophila melanogaster ornithine decarboxylase antizyme protein. Length = 254 Score = 86.2 bits (204), Expect = 4e-17 Identities = 47/122 (38%), Positives = 77/122 (63%), Gaps = 5/122 (4%) Frame = +3 Query: 120 VVNKILERKDKHPVKIEFKIYLTENTVIRWEAVVH--NNMMYLRVPGVLQ-SGSKDSFML 290 V+ +IL+ PV+I K+++TE+ W +++ NN++Y+ +P L +GSK +F+ Sbjct: 131 VLRQILQHDQ--PVQITIKLHVTEDQYTNWNTILNPVNNLLYVALPKDLPPAGSKQTFIS 188 Query: 291 LLDFAEERLGCKSCIICVLKSRPDRATLLRTFMFMGFQVLAPNSP-LTPQHIN-NPNYIF 464 LL+FAEE+L ++ + K +PDRA L+ F+FMGF+ L+ +P P IN N NY F Sbjct: 189 LLEFAEEKLEVDGIVMVMPKDQPDRARLIEAFLFMGFEPLSRKAPQAPPAAINDNENYYF 248 Query: 465 LH 470 L+ Sbjct: 249 LY 250 >AE013599-1406|AAF58570.2| 248|Drosophila melanogaster CG16747-PB, isoform B protein. Length = 248 Score = 86.2 bits (204), Expect = 4e-17 Identities = 47/122 (38%), Positives = 77/122 (63%), Gaps = 5/122 (4%) Frame = +3 Query: 120 VVNKILERKDKHPVKIEFKIYLTENTVIRWEAVVH--NNMMYLRVPGVLQ-SGSKDSFML 290 V+ +IL+ PV+I K+++TE+ W +++ NN++Y+ +P L +GSK +F+ Sbjct: 125 VLRQILQHDQ--PVQITIKLHVTEDQYTNWNTILNPVNNLLYVALPKDLPPAGSKQTFIS 182 Query: 291 LLDFAEERLGCKSCIICVLKSRPDRATLLRTFMFMGFQVLAPNSP-LTPQHIN-NPNYIF 464 LL+FAEE+L ++ + K +PDRA L+ F+FMGF+ L+ +P P IN N NY F Sbjct: 183 LLEFAEEKLEVDGIVMVMPKDQPDRARLIEAFLFMGFEPLSRKAPQAPPAAINDNENYYF 242 Query: 465 LH 470 L+ Sbjct: 243 LY 244 >AE013599-1405|AAF58567.2| 270|Drosophila melanogaster CG16747-PC, isoform C protein. Length = 270 Score = 86.2 bits (204), Expect = 4e-17 Identities = 47/122 (38%), Positives = 77/122 (63%), Gaps = 5/122 (4%) Frame = +3 Query: 120 VVNKILERKDKHPVKIEFKIYLTENTVIRWEAVVH--NNMMYLRVPGVLQ-SGSKDSFML 290 V+ +IL+ PV+I K+++TE+ W +++ NN++Y+ +P L +GSK +F+ Sbjct: 147 VLRQILQHDQ--PVQITIKLHVTEDQYTNWNTILNPVNNLLYVALPKDLPPAGSKQTFIS 204 Query: 291 LLDFAEERLGCKSCIICVLKSRPDRATLLRTFMFMGFQVLAPNSP-LTPQHIN-NPNYIF 464 LL+FAEE+L ++ + K +PDRA L+ F+FMGF+ L+ +P P IN N NY F Sbjct: 205 LLEFAEEKLEVDGIVMVMPKDQPDRARLIEAFLFMGFEPLSRKAPQAPPAAINDNENYYF 264 Query: 465 LH 470 L+ Sbjct: 265 LY 266 >AE013599-1404|AAF58569.2| 254|Drosophila melanogaster CG16747-PA, isoform A protein. Length = 254 Score = 86.2 bits (204), Expect = 4e-17 Identities = 47/122 (38%), Positives = 77/122 (63%), Gaps = 5/122 (4%) Frame = +3 Query: 120 VVNKILERKDKHPVKIEFKIYLTENTVIRWEAVVH--NNMMYLRVPGVLQ-SGSKDSFML 290 V+ +IL+ PV+I K+++TE+ W +++ NN++Y+ +P L +GSK +F+ Sbjct: 131 VLRQILQHDQ--PVQITIKLHVTEDQYTNWNTILNPVNNLLYVALPKDLPPAGSKQTFIS 188 Query: 291 LLDFAEERLGCKSCIICVLKSRPDRATLLRTFMFMGFQVLAPNSP-LTPQHIN-NPNYIF 464 LL+FAEE+L ++ + K +PDRA L+ F+FMGF+ L+ +P P IN N NY F Sbjct: 189 LLEFAEEKLEVDGIVMVMPKDQPDRARLIEAFLFMGFEPLSRKAPQAPPAAINDNENYYF 248 Query: 465 LH 470 L+ Sbjct: 249 LY 250 >U92536-1|AAD41441.1| 1487|Drosophila melanogaster RECQ helicase homolog protein. Length = 1487 Score = 29.5 bits (63), Expect = 4.5 Identities = 16/58 (27%), Positives = 27/58 (46%) Frame = -1 Query: 416 RSQNLESHEHEGAQQGSAVGTTLQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHA 243 +S L+ E G GTT DD E L +EI+++H+ + A + G++ Sbjct: 566 QSMMLDGDLEEEQLNGPTQGTTTSGMDDGEDDLEGLLAEIEDEHQKMQARRSEFNGYS 623 >X87141-1|CAA60619.1| 722|Drosophila melanogaster VND (ventral nervous system defective)protein. Length = 722 Score = 29.1 bits (62), Expect = 6.0 Identities = 19/45 (42%), Positives = 20/45 (44%) Frame = -1 Query: 368 SAVGTTLQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHAEVH 234 SA T +QNA L A L QH A AAGL HA H Sbjct: 662 SATATAMQNAAAHHLVA--LNGAAAYQHAAAAAAGLHAHAHAHAH 704 >AL031883-2|CAA21410.1| 723|Drosophila melanogaster EG:118B3.1,FBgn0003986;vnd protein. Length = 723 Score = 29.1 bits (62), Expect = 6.0 Identities = 19/45 (42%), Positives = 20/45 (44%) Frame = -1 Query: 368 SAVGTTLQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHAEVH 234 SA T +QNA L A L QH A AAGL HA H Sbjct: 663 SATATAMQNAAAHHLVA--LNGAAAYQHAAAAAAGLHAHAHAHAH 705 >AE014298-61|AAF45521.1| 723|Drosophila melanogaster CG6172-PA, isoform A protein. Length = 723 Score = 29.1 bits (62), Expect = 6.0 Identities = 19/45 (42%), Positives = 20/45 (44%) Frame = -1 Query: 368 SAVGTTLQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHAEVH 234 SA T +QNA L A L QH A AAGL HA H Sbjct: 663 SATATAMQNAAAHHLVA--LNGAAAYQHAAAAAAGLHAHAHAHAH 705 >AE014298-60|ABI30961.1| 577|Drosophila melanogaster CG6172-PB, isoform B protein. Length = 577 Score = 29.1 bits (62), Expect = 6.0 Identities = 19/45 (42%), Positives = 20/45 (44%) Frame = -1 Query: 368 SAVGTTLQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHAEVH 234 SA T +QNA L A L QH A AAGL HA H Sbjct: 517 SATATAMQNAAAHHLVA--LNGAAAYQHAAAAAAGLHAHAHAHAH 559 >AY119515-1|AAM50169.1| 494|Drosophila melanogaster GH14048p protein. Length = 494 Score = 28.7 bits (61), Expect = 7.9 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -3 Query: 333 CNSYSRDALQ--RNPGAA*SCPCCRTAGPRARGGTSCCCAQQPP 208 CN+Y ++A + P CP T P G + CC QQPP Sbjct: 5 CNTYCQNACDPCQAPTDFSPCPPNSTCPPCDCGDYAGCCYQQPP 48 >AE014297-2491|AAF55530.2| 494|Drosophila melanogaster CG7131-PA, isoform A protein. Length = 494 Score = 28.7 bits (61), Expect = 7.9 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -3 Query: 333 CNSYSRDALQ--RNPGAA*SCPCCRTAGPRARGGTSCCCAQQPP 208 CN+Y ++A + P CP T P G + CC QQPP Sbjct: 5 CNTYCQNACDPCQAPTDFSPCPPNSTCPPCDCGDYAGCCYQQPP 48 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 28,402,963 Number of Sequences: 53049 Number of extensions: 576421 Number of successful extensions: 1817 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1694 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1815 length of database: 24,988,368 effective HSP length: 82 effective length of database: 20,638,350 effective search space used: 3013199100 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -