Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1049
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell l...    30   1.8  
AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kina...    30   1.8  
U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.     29   4.1  
L23648-8|AAA28030.1|  503|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell
           lineage protein 18 protein.
          Length = 562

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 353 TLQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHAEVH-HVVVHNSLPAYNCVFSEIN 177
           T+    D T  A+TL       H+ V  A       A +H + +VHN + A NC+ +E+N
Sbjct: 375 TICRHGDKTKGAQTL-----RTHQLVSLATQVSSAVAHIHKYRIVHNDIAARNCLIAEVN 429


>AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kinase
           receptor-relatedprotein precursor RYK protein.
          Length = 583

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 353 TLQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHAEVH-HVVVHNSLPAYNCVFSEIN 177
           T+    D T  A+TL       H+ V  A       A +H + +VHN + A NC+ +E+N
Sbjct: 396 TICRHGDKTKGAQTL-----RTHQLVSLATQVSSAVAHIHKYRIVHNDIAARNCLIAEVN 450


>U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 444 NNPNYI-FLHYNMQ*NFIHKQSFFSGEKLTKKNNFLIFST 560
           N PN + FLH+ +  NF  K  +FS   L     FLI++T
Sbjct: 236 NIPNCVLFLHFFLNCNFTCKSKYFSFSNLANFFFFLIWNT 275


>L23648-8|AAA28030.1|  503|Caenorhabditis elegans Hypothetical
           protein F44B9.2 protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 150 KHPVKIEFKIYLTENTVIRWE-AVVHNNMMYLRVPGVLQSG 269
           ++  KIE   +L E T++R   ++ HN+ +YL V G + SG
Sbjct: 324 EYVAKIECPSWLAECTILRERLSIAHNDHLYLCVCGEIFSG 364


>U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical
           protein F52C9.5 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
 Frame = +3

Query: 519 EKLTKKNNFLIFSTKIIVFFSYGNIRLSTTR-------SSQALRDP 635
           E+  K  NF IF+ K +V  S  N   STTR       SSQ  RDP
Sbjct: 73  EEKQKSQNFQIFNEKDLVTNSNANPYFSTTRKPKNRSDSSQKARDP 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,596,546
Number of Sequences: 27780
Number of extensions: 294403
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)