Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1047
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678... 29 2.7
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 2.7
11_04_0289 - 15804766-15804977,15805742-15805862,15806541-158067... 29 3.6
12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698... 28 4.7
10_08_0914 + 21535519-21535797,21535961-21536339,21536425-215365... 28 4.7
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472... 28 4.7
09_04_0744 - 19867604-19867686,19868075-19869872,19870777-198708... 28 6.2
11_01_0711 - 5839385-5840311,5840815-5841111 27 8.2
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659... 27 8.2
05_01_0415 - 3275236-3276244,3276342-3276428,3276829-3277208,327... 27 8.2
>05_05_0199 -
23165776-23166259,23166356-23167128,23167633-23167869,
23167973-23168197
Length = 572
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 67 ASGELSILHS-PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEA 243
A G L +++S P SLS + S +F SLL S G S+ L+T P + P +
Sbjct: 4 APGSLPLVNSRPVSLSLAASRSSFSSLL----SGGAGSSLN--------LMTPPSSLPPS 51
Query: 244 VVEVYISGISSLG 282
Y G+SS G
Sbjct: 52 SPSSYFGGVSSSG 64
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 292 DFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNG 390
DF YP+ EY P FDV H +RF NG
Sbjct: 311 DFGGDMYPVEDYEYAPADFDVRAHHERERF-NG 342
>11_04_0289 -
15804766-15804977,15805742-15805862,15806541-15806776,
15807639-15807766,15807873-15807910,15808041-15808129,
15808669-15808774,15811395-15811580
Length = 371
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 190 SLQRKGQEKQ--KIFLLKDSRKFYWNQRNLTTQDYGGCLVRQRH*YXXXXXXXKPIQIP 20
S++R EK + L +RK W+ R+L+T+ +QRH Y Q+P
Sbjct: 128 SVRRNQAEKHCSRASSLVSNRKKIWDSRSLSTRGLAPVTAQQRHHYITSILARMDYQVP 186
>12_02_0592 +
20868884-20868954,20869091-20869216,20869554-20869862,
20870017-20870300,20870410-20871305,20871586-20871642,
20872293-20872340,20873046-20873114
Length = 619
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/88 (25%), Positives = 40/88 (45%)
Frame = +1
Query: 202 NGLLITDPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRF 381
N +L PF TP+ + ++ + + G SAD PL D+ +P + ++ QR
Sbjct: 255 NFILGAMPFGTPQDLNYANVTSVRTTGFSAD------PLPTDQKQP-AWKPYLYKGRQRT 307
Query: 382 TNGGNKLVNINLSDSDQLLSYSNVLGDL 465
+ +N L D D + + +V G +
Sbjct: 308 LFSSLETLNAALYDRDDVQDFLSVSGQV 335
>10_08_0914 +
21535519-21535797,21535961-21536339,21536425-21536568,
21536681-21536730,21536820-21536877,21536979-21537208
Length = 379
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 43 ISSIIGINASGELSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWN 204
I S +G+ +SG+L L + + + G++ + + +E+ S + L E+ W+
Sbjct: 198 IQSAVGVRSSGDLMTLTAAAATALRGAATMKQRVQREMRSNASVLPYEKGHSWS 251
>07_03_0378 +
17446311-17446514,17446814-17446927,17447124-17447242,
17447595-17447641,17447720-17447820,17450769-17450840,
17451290-17451403,17451495-17451500,17451501-17451611
Length = 295
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2
Query: 185 STERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKT 33
S E P A N +F L LLE KL+ GLW+ + + ++++ KT
Sbjct: 100 SVESP--APNHTFPSLRCFLLESFKLHQKGLWKSECICDPEVTSVKDLSKT 148
>09_04_0744 -
19867604-19867686,19868075-19869872,19870777-19870801,
19872313-19872710
Length = 767
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 355 LKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLKSSV---EED 525
++H + R+ +L NIN S L + + L PK++ + L+ S+ ED
Sbjct: 330 IRHLVVSRWKRRDERLENINFSYVRSLTVFGDCPASLISPKMRLLRVLDLEDSLNLKNED 389
Query: 526 LQFLSELAALK 558
L+ + EL L+
Sbjct: 390 LRHVGELHHLR 400
>11_01_0711 - 5839385-5840311,5840815-5841111
Length = 407
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 79 LSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVEVY 258
L+I H ++ + KT LKEI + L E+S + +TD T V E
Sbjct: 108 LTIAHK---ITLANKMKTISDELKEITNQHLSFRFTEDSSYKEHRVTDKRETSSKVEEAL 164
Query: 259 ISG 267
+ G
Sbjct: 165 VVG 167
>06_02_0038 +
10865068-10865150,10865249-10865335,10865835-10865936,
10867000-10870078
Length = 1116
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -2
Query: 473 GISKSPNTFEYDKS*SESLKLIFTSLLPPLVKR*LILCFNTSK 345
G+SK PN Y S S K + P + I C+N +
Sbjct: 93 GVSKDPNPCSYSSSSPSSCKPSVVKFISPSARLQAIQCYNLQR 135
>05_01_0415 -
3275236-3276244,3276342-3276428,3276829-3277208,
3279236-3279325
Length = 521
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 253 VYISGISSLGSSADFKSKKYPLVV 324
++++ ISS G+ DF + YPL+V
Sbjct: 62 LFVASISSFGADHDFAAMMYPLLV 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.129 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,188
Number of Sequences: 37544
Number of extensions: 257752
Number of successful extensions: 537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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