Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1047
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.52 
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.69 
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_13793| Best HMM Match : Helicase_C (HMM E-Value=5.6)                30   1.6  
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   3.7  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   3.7  
SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_44999| Best HMM Match : RepA_N (HMM E-Value=1.9)                    27   8.5  
SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)                    27   8.5  

>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 373  QRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDI-PKVKKQSLQHLKSSVEEDLQFLSELA 549
            QRFT   NK+V + LS + ++  Y   L +LD+  +  +Q    L+  +E       E  
Sbjct: 2053 QRFTGELNKIVLLLLSLTQRMHRYEKTLSELDMSEEADRQQRDILQEKIEYVKNQYEEAC 2112

Query: 550  ALKAVTEK 573
             +K V +K
Sbjct: 2113 KIKEVNDK 2120


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
 Frame = +1

Query: 220  DPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQR--FTNG- 390
            DP +   +   VY+  + S  ++  FK + Y + + E+ P TF V+K     R   +NG 
Sbjct: 1251 DPVDPRWSAAVVYVEVLDSNDNAPVFKKQSYVVEMVEHSPTTFTVVKVEATDRDVGSNGR 1310

Query: 391  -GNKLVNINLSDSDQLLSYSNVL---GDLDIPKVKKQSL 495
                +V+ N+  +  + S S V+    D+D  K+++  L
Sbjct: 1311 ISYSIVSGNVDGAFVIDSSSGVIKPAQDIDREKIQRYLL 1349


>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +1

Query: 97  PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPE 240
           PE  S SGS    + L    FS ++  S +E+  W  LL+TD +N P+
Sbjct: 405 PEMNSSSGSPSCLDVL--SCFSVNVASS-KESKFWCELLVTDKYNAPD 449


>SB_13793| Best HMM Match : Helicase_C (HMM E-Value=5.6)
          Length = 146

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = +1

Query: 355 LKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDL 528
           L+HR+   FT  G+  VNIN+SD + +    +VLG+  I + +   L  L+     +L
Sbjct: 53  LRHRMGF-FTKSGD--VNINVSDVNNIAFSRSVLGNPTISRARGYQLHQLEDRAIHEL 107


>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1273

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 295  FKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 456
            FKS K P ++DE +    D+LK   + +F    +  +N    DSD++ +   +L
Sbjct: 1017 FKSTKNPPLIDELKDFEDDMLKMIQSVKFIEASSPFLNKLKEDSDRIKNKPKLL 1070


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = -3

Query: 205 HSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDYGGCLVR 74
           H+I S++Q  G  +  +  +K  +   W++  ++T ++GG L++
Sbjct: 374 HNIVSTIQCAGNRRSDMNRVKKVKGLDWSEGAISTAEWGGALLK 417


>SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 182 TERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEAL-IPIIEEIKK 36
           T RP+ A+ +  +RL +V+  P+K+ND      +S  EA  I +++ +++
Sbjct: 314 TSRPKFADIV--RRLDEVIRSPDKMNDEFAGSRISRAEATNIAMVKSVEE 361


>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 433 LLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDLQFLSELAALKAVTEKV 576
           LLS S+ +G LD+    ++ LQ   + V+      S+LA ++ V EK+
Sbjct: 317 LLSTSDFVGALDLISTTQEVLQQELAGVQSFRHLGSQLAEMERVIEKM 364


>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +1

Query: 280 GSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNI 411
           GS+ D +  ++ +++D  EP+T ++ + +I      GGN++ +I
Sbjct: 279 GSAEDVQKAEH-IIMDMIEPETVELKESQIGMVIGKGGNRINSI 321


>SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +1

Query: 106 LSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVEVYISGISSLGS 285
           L FS +S+T+ S    I  A+L   ++E       ++  P N+      + +SG  SLG 
Sbjct: 311 LIFSTASQTWSSGFSSIMCATLEHYLDE------FILAGPANSQYCAATLSLSGSVSLGV 364

Query: 286 SADFKSKKYPLVV 324
                S +YP V+
Sbjct: 365 PLHPASIRYPSVI 377


>SB_44999| Best HMM Match : RepA_N (HMM E-Value=1.9)
          Length = 402

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 294 ISGTPQTGYATNVNFDNCFRSV 229
           ISG PQ G+A  ++  NCF+++
Sbjct: 230 ISGDPQQGHAVFISAINCFQNI 251


>SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)
          Length = 348

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 33/111 (29%), Positives = 46/111 (41%)
 Frame = +1

Query: 220 DPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNK 399
           DP +T    + ++   I   G+SAD        V D  +P    VLK    + F  GG  
Sbjct: 10  DPRDTYCYEIHIHTGFIRGAGTSADVSIVLNGAVADS-DPR---VLKDPKRKVFKTGG-- 63

Query: 400 LVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDLQFLSELAA 552
            V+  L    Q L  S  + +   PK KK+ + H    +   L  LS LAA
Sbjct: 64  -VDAFLLTVPQSLDPSEEMKEA--PKTKKEGIPHWCVYIAYSLALLSSLAA 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.129    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,401,392
Number of Sequences: 59808
Number of extensions: 312871
Number of successful extensions: 734
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)