Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1047
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    35   0.048
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    35   0.048
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    35   0.048
Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    27   7.4  
Z69661-6|CAA93492.4|  299|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       27   7.4  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       27   7.4  
AF016676-5|AAG24100.1|  473|Caenorhabditis elegans Cytochrome p4...    27   7.4  
U41995-13|AAA83469.1|  223|Caenorhabditis elegans Hypothetical p...    27   9.7  

>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 34.7 bits (76), Expect = 0.048
 Identities = 45/153 (29%), Positives = 64/153 (41%), Gaps = 33/153 (21%)
 Frame = -2

Query: 365 LCFNTSKVSGSYSSTTKGYFLD-LKSAELP--------RLDMPLM*TSTTASGVLNG--- 222
           L  N +KV+GS  S  KG   D L + ELP         + M L       +G+LN    
Sbjct: 26  LSLNGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGL 85

Query: 221 -SVINNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP- 72
            SV+ NP+  E       +PR   NI+F  ++       V  EP K   S  W+  +SP 
Sbjct: 86  PSVVENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASPS 144

Query: 71  -----EALIPIIEEI------KKTHTDTIVAAI 6
                E  + ++ +I        TH DT+V  I
Sbjct: 145 NNNEHETPVDLLRKISVSRKESGTHVDTVVTTI 177


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 34.7 bits (76), Expect = 0.048
 Identities = 45/153 (29%), Positives = 64/153 (41%), Gaps = 33/153 (21%)
 Frame = -2

Query: 365 LCFNTSKVSGSYSSTTKGYFLD-LKSAELP--------RLDMPLM*TSTTASGVLNG--- 222
           L  N +KV+GS  S  KG   D L + ELP         + M L       +G+LN    
Sbjct: 26  LSLNGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGL 85

Query: 221 -SVINNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP- 72
            SV+ NP+  E       +PR   NI+F  ++       V  EP K   S  W+  +SP 
Sbjct: 86  PSVVENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASPS 144

Query: 71  -----EALIPIIEEI------KKTHTDTIVAAI 6
                E  + ++ +I        TH DT+V  I
Sbjct: 145 NNNEHETPVDLLRKISVSRKESGTHVDTVVTTI 177


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 34.7 bits (76), Expect = 0.048
 Identities = 45/153 (29%), Positives = 64/153 (41%), Gaps = 33/153 (21%)
 Frame = -2

Query: 365 LCFNTSKVSGSYSSTTKGYFLD-LKSAELP--------RLDMPLM*TSTTASGVLNG--- 222
           L  N +KV+GS  S  KG   D L + ELP         + M L       +G+LN    
Sbjct: 26  LSLNGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGL 85

Query: 221 -SVINNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP- 72
            SV+ NP+  E       +PR   NI+F  ++       V  EP K   S  W+  +SP 
Sbjct: 86  PSVVENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASPS 144

Query: 71  -----EALIPIIEEI------KKTHTDTIVAAI 6
                E  + ++ +I        TH DT+V  I
Sbjct: 145 NNNEHETPVDLLRKISVSRKESGTHVDTVVTTI 177


>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 490 TVF*LLEYLNHLTHLNMTKADQSHL 416
           TVF LLEYLN+L+ LN    D   L
Sbjct: 639 TVFFLLEYLNYLSELNAEVEDTERL 663


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
 Frame = -2

Query: 578 STFSVTAFKAASSLRNCKSSSTEDFKCCKDCFLT----FGISKSPNTFEYDKS*SESLKL 411
           S+ S TA    SS    +SS+T   +       T    + + K+  TF YD   S S+ L
Sbjct: 516 SSVSSTASSTQSSTSTQQSSTTTKSETTTSSDGTNPDFYFVEKATTTF-YD---STSVNL 571

Query: 410 IFTSLLPPLVKR*LILCFNTSKVSGSYSSTTKGYFLDLKSAELPRL 273
              S L  +  +  I C  TS  S +Y STTK      KS  +PRL
Sbjct: 572 TLNSGLGIIGYQTSIEC--TSPTSSNYVSTTKDGACFTKSVSMPRL 615


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
 Frame = -2

Query: 578 STFSVTAFKAASSLRNCKSSSTEDFKCCKDCFLT----FGISKSPNTFEYDKS*SESLKL 411
           S+ S TA    SS    +SS+T   +       T    + + K+  TF YD   S S+ L
Sbjct: 516 SSVSSTASSTQSSTSTQQSSTTTKSETTTSSDGTNPDFYFVEKATTTF-YD---STSVNL 571

Query: 410 IFTSLLPPLVKR*LILCFNTSKVSGSYSSTTKGYFLDLKSAELPRL 273
              S L  +  +  I C  TS  S +Y STTK      KS  +PRL
Sbjct: 572 TLNSGLGIIGYQTSIEC--TSPTSSNYVSTTKDGACFTKSVSMPRL 615


>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 205 GLLITDPFNTPEAVVEVYISGISSLG---SSADFKSKKYPLV 321
           G+L+  P  T ++VV V ISG SSL     S D  +K  P +
Sbjct: 173 GVLLWRPAMTDQSVVRVLISGTSSLSRIQQSLDKAAKSLPFL 214


>Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical
           protein F32A7.5b protein.
          Length = 764

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 205 GLLITDPFNTPEAVVEVYISGISSLG---SSADFKSKKYPLV 321
           G+L+  P  T ++VV V ISG SSL     S D  +K  P +
Sbjct: 173 GVLLWRPAMTDQSVVRVLISGTSSLSRIQQSLDKAAKSLPFL 214


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 205 GLLITDPFNTPEAVVEVYISGISSLG---SSADFKSKKYPLV 321
           G+L+  P  T ++VV V ISG SSL     S D  +K  P +
Sbjct: 173 GVLLWRPAMTDQSVVRVLISGTSSLSRIQQSLDKAAKSLPFL 214


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 15  NYGICMGFLNLFNNRYQCLWRTKH 86
           +YG CMG  N F+++ QC+ + K+
Sbjct: 65  HYGGCMGTKNRFSSKQQCVKQCKY 88


>Z69661-6|CAA93492.4|  299|Caenorhabditis elegans Hypothetical
           protein F48F7.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -3

Query: 253 LRQLLQEC*TDQLSIIHSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDY 92
           LR+L+++   D L     ++S  +++ ++ Q + LLKD+     N  N T QDY
Sbjct: 89  LRKLVRQAEDDFLEFTKQVQSVTEKRMRQNQ-LELLKDNLNKLINLFNETHQDY 141


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 15  NYGICMGFLNLFNNRYQCLWRTKH 86
           +YG CMG  N F+++ QC+ + K+
Sbjct: 65  HYGGCMGTKNRFSSKQQCVKQCKY 88


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 15  NYGICMGFLNLFNNRYQCLWRTKH 86
           +YG CMG  N F+++ QC+ + K+
Sbjct: 65  HYGGCMGTKNRFSSKQQCVKQCKY 88


>AF016676-5|AAG24100.1|  473|Caenorhabditis elegans Cytochrome p450
           family protein 33C7 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 367 FCVLIHQKYQVHTHLQLKDTFW 302
           F      +YQVHTHL  K TF+
Sbjct: 452 FIANFFNRYQVHTHLSFKITFF 473


>U41995-13|AAA83469.1|  223|Caenorhabditis elegans Hypothetical
           protein E02C12.12 protein.
          Length = 223

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 40  LISSIIGINASGELSILHSPESLSFSGSSKTFESLLKEIFS 162
           LIS + GI     L    S E  +F+G  +  ES+ +E+F+
Sbjct: 175 LISLVRGIATFAALGETLSEEEKAFAGGPEYLESMFEEVFT 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.129    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,524,585
Number of Sequences: 27780
Number of extensions: 249093
Number of successful extensions: 661
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)