Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1047
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 221 IRSTLLKQLSKFTLVAYPVWGVPL 292
           +RS  + +LS   LV +PVW V L
Sbjct: 889 LRSLEILRLSGNRLVTFPVWQVTL 912


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 298 KSKKYPLVVDEYEPDTF 348
           ++K YPL VD++   TF
Sbjct: 66  RTKNYPLDVDQWHNKTF 82


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 151 LLKDSRKFYWNQRNLTTQD 95
           LLKD  K +W +R L   D
Sbjct: 179 LLKDPVKEFWERRTLQISD 197


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 151 LLKDSRKFYWNQRNLTTQD 95
           LLKD  K +W +R L   D
Sbjct: 232 LLKDPVKEFWERRTLQISD 250


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 577 PPFR*QLLRLQVHLEIASLL 518
           PPFR +  R +VH ++ S L
Sbjct: 63  PPFRAEDYRQEVHAQVYSCL 82


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -2

Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -2

Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -2

Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -2

Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -2

Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -2

Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -2

Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -2

Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 331 YEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 456
           +E D+F V KH    R +  G    N+  + +   +  S V+
Sbjct: 707 WEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVI 748



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 281 PRLDMPLM*TSTTASGVLNGSVINNP 204
           P + +P+   STT +GV+   VI  P
Sbjct: 827 PYMFLPVSYMSTTMAGVIYPPVIGTP 852


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 7   MAATMVSVWVFLISSIIG 60
           M    + +W+F I+SI+G
Sbjct: 483 MVLDRLFLWIFTIASIVG 500


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 274 SLGSSADFKSKKYPLVVDEYEP 339
           S+ +    ++ KYP+VV  Y P
Sbjct: 5   SVEAVMSLRALKYPMVVHVYHP 26


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 274 SLGSSADFKSKKYPLVVDEYEP 339
           S+ +    ++ KYP+VV  Y P
Sbjct: 5   SVEAVMSLRALKYPMVVHVYHP 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.129    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,794
Number of Sequences: 438
Number of extensions: 2964
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)