BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1047 (582 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 1.7 Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 22 3.8 AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 3.8 AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 3.8 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 5.1 AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 5.1 AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 5.1 AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 5.1 AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 5.1 AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 22 5.1 AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 5.1 AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 5.1 AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 5.1 AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 5.1 AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 6.7 DQ091184-1|AAZ42364.1| 157|Apis mellifera lipophorin receptor p... 21 8.9 DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor p... 21 8.9 >AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor protein. Length = 1370 Score = 23.4 bits (48), Expect = 1.7 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +2 Query: 221 IRSTLLKQLSKFTLVAYPVWGVPL 292 +RS + +LS LV +PVW V L Sbjct: 889 LRSLEILRLSGNRLVTFPVWQVTL 912 >Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP57-2 protein. Length = 464 Score = 22.2 bits (45), Expect = 3.8 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = +1 Query: 298 KSKKYPLVVDEYEPDTF 348 ++K YPL VD++ TF Sbjct: 66 RTKNYPLDVDQWHNKTF 82 >AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 593 Score = 22.2 bits (45), Expect = 3.8 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = -3 Query: 151 LLKDSRKFYWNQRNLTTQD 95 LLKD K +W +R L D Sbjct: 179 LLKDPVKEFWERRTLQISD 197 >AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 646 Score = 22.2 bits (45), Expect = 3.8 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = -3 Query: 151 LLKDSRKFYWNQRNLTTQD 95 LLKD K +W +R L D Sbjct: 232 LLKDPVKEFWERRTLQISD 250 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 21.8 bits (44), Expect = 5.1 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -3 Query: 577 PPFR*QLLRLQVHLEIASLL 518 PPFR + R +VH ++ S L Sbjct: 63 PPFRAEDYRQEVHAQVYSCL 82 >AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 21.8 bits (44), Expect = 5.1 Identities = 14/58 (24%), Positives = 21/58 (36%) Frame = -2 Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24 S+ S + P + SK + EKL S + PE E++K D Sbjct: 74 SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131 >AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 21.8 bits (44), Expect = 5.1 Identities = 14/58 (24%), Positives = 21/58 (36%) Frame = -2 Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24 S+ S + P + SK + EKL S + PE E++K D Sbjct: 74 SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131 >AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 21.8 bits (44), Expect = 5.1 Identities = 14/58 (24%), Positives = 21/58 (36%) Frame = -2 Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24 S+ S + P + SK + EKL S + PE E++K D Sbjct: 74 SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131 >AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 21.8 bits (44), Expect = 5.1 Identities = 14/58 (24%), Positives = 21/58 (36%) Frame = -2 Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24 S+ S + P + SK + EKL S + PE E++K D Sbjct: 74 SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131 >AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 21.8 bits (44), Expect = 5.1 Identities = 14/58 (24%), Positives = 21/58 (36%) Frame = -2 Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24 S+ S + P + SK + EKL S + PE E++K D Sbjct: 74 SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131 >AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 21.8 bits (44), Expect = 5.1 Identities = 14/58 (24%), Positives = 21/58 (36%) Frame = -2 Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24 S+ S + P + SK + EKL S + PE E++K D Sbjct: 74 SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131 >AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. Length = 400 Score = 21.8 bits (44), Expect = 5.1 Identities = 14/58 (24%), Positives = 21/58 (36%) Frame = -2 Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24 S+ S + P + SK + EKL S + PE E++K D Sbjct: 74 SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131 >AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex determiner protein. Length = 401 Score = 21.8 bits (44), Expect = 5.1 Identities = 14/58 (24%), Positives = 21/58 (36%) Frame = -2 Query: 197 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 24 S+ S + P + SK + EKL S + PE E++K D Sbjct: 74 SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 21.8 bits (44), Expect = 5.1 Identities = 11/42 (26%), Positives = 19/42 (45%) Frame = +1 Query: 331 YEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 456 +E D+F V KH R + G N+ + + + S V+ Sbjct: 707 WEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVI 748 Score = 21.8 bits (44), Expect = 5.1 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 281 PRLDMPLM*TSTTASGVLNGSVINNP 204 P + +P+ STT +GV+ VI P Sbjct: 827 PYMFLPVSYMSTTMAGVIYPPVIGTP 852 >AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic acetylcholine receptorApisa2 subunit protein. Length = 541 Score = 21.4 bits (43), Expect = 6.7 Identities = 7/18 (38%), Positives = 12/18 (66%) Frame = +1 Query: 7 MAATMVSVWVFLISSIIG 60 M + +W+F I+SI+G Sbjct: 483 MVLDRLFLWIFTIASIVG 500 >DQ091184-1|AAZ42364.1| 157|Apis mellifera lipophorin receptor protein. Length = 157 Score = 21.0 bits (42), Expect = 8.9 Identities = 8/22 (36%), Positives = 13/22 (59%) Frame = +1 Query: 274 SLGSSADFKSKKYPLVVDEYEP 339 S+ + ++ KYP+VV Y P Sbjct: 5 SVEAVMSLRALKYPMVVHVYHP 26 >DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor protein. Length = 128 Score = 21.0 bits (42), Expect = 8.9 Identities = 8/22 (36%), Positives = 13/22 (59%) Frame = +1 Query: 274 SLGSSADFKSKKYPLVVDEYEP 339 S+ + ++ KYP+VV Y P Sbjct: 5 SVEAVMSLRALKYPMVVHVYHP 26 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.311 0.129 0.348 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 148,794 Number of Sequences: 438 Number of extensions: 2964 Number of successful extensions: 18 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 18 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 16870914 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.8 bits)
- SilkBase 1999-2023 -