Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1047
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containi...    28   4.0  
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica...    28   4.0  
At5g11440.1 68418.m01336 hypothetical protein                          28   5.2  
At3g57940.1 68416.m06458 expressed protein contains Pfam profile...    28   5.2  
At1g80840.1 68414.m09484 WRKY family transcription factor simila...    28   5.2  
At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    27   6.9  
At3g29400.1 68416.m03694 exocyst subunit EXO70 family protein si...    27   9.1  
At1g74080.1 68414.m08580 myb family transcription factor (MYB122...    27   9.1  

>At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 590

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 154 IFSASLGLSVEENSEWNGLLITDPFNTPEAVVE-VYISGISSL-GSSADFK 300
           IF   LGL ++ +  W GL+IT+  N  E+ +E   IS ++++ G  + F+
Sbjct: 12  IFINELGLLLQAHFTWIGLIITENCNGLESSIEREMISSLAAITGGPSTFR 62


>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
           to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
           GI:21427469; contains Pfam profile PF00022: Actin
          Length = 363

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 136 ESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVE 252
           E LL+ +    LG   EE +E N +L TDP  TP+A+ E
Sbjct: 70  EDLLRYVVYTGLGW--EEGNEGN-ILFTDPLCTPKAIRE 105


>At5g11440.1 68418.m01336 hypothetical protein 
          Length = 155

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +1

Query: 103 SLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVEVYISGISSLG 282
           ++  S   K+ E   K+I    L L ++ + +   LL+T    + E++ +VY++    L 
Sbjct: 39  TVEVSMPKKSSEMAYKQIRDDDLDLEMDIDMDIEYLLVTFSGLSQESITDVYLANGGDLE 98

Query: 283 SSADFKSKK--YPLVVDEYEPDTFDV 354
           ++ +  ++   Y    +E  P+T D+
Sbjct: 99  ATIEMLNQLEIYSTESEENLPETLDI 124


>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1024

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 58  GINASGELSILHSPESLSFSGSSKTFESL-LKEIFSASLGLSVEENSEWNGLLITD 222
           G+  S  ++++HSP+SL F  +   F+ + L E      G  +E  S  NGLL  D
Sbjct: 440 GLEGSVLVNVIHSPDSLKFLRTGCLFKKIELTESIRYGSGDPIE--SWLNGLLCLD 493


>At1g80840.1 68414.m09484 WRKY family transcription factor similar
           to WRKY transcription factor GB:BAA87058 GI:6472585 from
           [Nicotiana tabacum]
          Length = 302

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 463 LDIPKVKKQSLQHLKSSVEEDLQFLSELAALKAVTEKV 576
           +D P+V+K  ++ + SS+ +D  F + LAA  AVT K+
Sbjct: 259 IDFPQVQKLLVEQMASSLTKDPNFTAALAA--AVTGKL 294


>At1g67220.1 68414.m07651 zinc finger protein-related similar to
           SP|Q09472 E1A-associated protein p300 {Homo sapiens},
           SP|Q92793 CREB-binding protein {Homo sapiens}; contains
           Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
           PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -2

Query: 251 STTASGVLNGSVINNPFHSEFSSTERPR--EAENISFKRLSKVLLEPEKLNDSGLWRMLS 78
           +T +    N  + N P  S  +S E  +  E+     KR  K   EP KLN    W +L 
Sbjct: 17  NTESFDEFNQRLNNLPAESNVTSDEDAQFLESRKCQSKRWRKE--EPLKLNLRSPWNVLC 74

Query: 77  SPEALIPIIEEIKKT 33
           SPE++      ++KT
Sbjct: 75  SPESISSAKFIVEKT 89


>At3g29400.1 68416.m03694 exocyst subunit EXO70 family protein
           similar to EXO70 protein (GI:2352998) [Mus musculus];
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 658

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/103 (20%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
 Frame = +1

Query: 277 LGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNK----LVNINLSDSDQLLSY 444
           LGS+ D +     +VVD   PD    LK+  N    +G ++    +  +   D+     Y
Sbjct: 182 LGSNNDSRRNSGDVVVDLVNPDVILDLKNIANTMIASGYDRECIQVCTMVRKDALDEFLY 241

Query: 445 SNVLGDLDIPKVKKQSLQHLKSSVEEDLQFLSELAALKAVTEK 573
           ++ +  L I  V +     L +++++ ++ + ++  +  ++EK
Sbjct: 242 NHEVEKLSIEDVLRMDWATLNTNIKKWVRVMRDIVQVYLLSEK 284


>At1g74080.1 68414.m08580 myb family transcription factor (MYB122)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 333

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 367 INQRFTNGGNKLVNINLSDSDQLLSYSNVLGDL-DIPKVKKQSLQHLKSSVEEDL 528
           IN+  T     L +   SDS     Y  ++GD+ D+ +   + L H+ S   EDL
Sbjct: 227 INRSITVDATSLSSSTFSDSPDPCLYEEIVGDIEDMTRFSSRCLSHVLS--HEDL 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.129    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,892,087
Number of Sequences: 28952
Number of extensions: 233997
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)