Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1044
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08)                   28   4.8  
SB_27731| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08)
          Length = 197

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 420 RNYKSYYIIINRDVSRRARPRHCFILKFLQRLLSLNYIKRGM 545
           ++Y    ++I +    +   R C +L FLQR  +L Y+ +G+
Sbjct: 52  QSYSLLSLVIRKTRQSQVTSRTCRLLDFLQRPSALYYVHKGL 93


>SB_27731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 370 TKFSTNNVSL-FNQQ*YSETINHT-IL**IETLVDERDHDTVLSLNSYNDYSL*ITLNVE 543
           TK   NN+ + +N      T   T +   I T   ++ HD  +S+N+ N+  + IT+N+ 
Sbjct: 18  TKVDINNIDINYNMNTSINTNTRTNVKISITTHQHQQQHDINISINTNNNIDINITININ 77

Query: 544 WNDA 555
            N A
Sbjct: 78  NNIA 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,715
Number of Sequences: 59808
Number of extensions: 261489
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)