Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1044
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55854-2|AAA98011.2| 1427|Caenorhabditis elegans Phospholipase d...    27   9.5  
U41264-9|AAA82429.3|  240|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AB028889-1|BAA97571.1| 1427|Caenorhabditis elegans phospholipase...    27   9.5  

>U55854-2|AAA98011.2| 1427|Caenorhabditis elegans Phospholipase d
           protein 1 protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 414 ILRNYKSYYIIINRDVSRRARPRHCFILKFLQRLLSLNYIK 536
           ++RNYK + ++ NR ++ RAR +    +K  Q     NY++
Sbjct: 192 VIRNYKDFTLLNNRLMAHRAREQFMAPIKRTQERFD-NYLE 231


>U41264-9|AAA82429.3|  240|Caenorhabditis elegans Hypothetical
           protein F10E7.2 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 39  IFITTYILCVSLVVCSCQIAYSKNLISSLFNGRNNYFV 152
           +F+TTY LC++L++    I  S +LI    +  N +FV
Sbjct: 203 VFLTTYCLCLTLIL-KRSIRLSNHLIFKKVHCFNLFFV 239


>AB028889-1|BAA97571.1| 1427|Caenorhabditis elegans phospholipase D
           protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 414 ILRNYKSYYIIINRDVSRRARPRHCFILKFLQRLLSLNYIK 536
           ++RNYK + ++ NR ++ RAR +    +K  Q     NY++
Sbjct: 192 VIRNYKDFTLLNNRLMAHRAREQFMAPIKRTQERFD-NYLE 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,241,611
Number of Sequences: 27780
Number of extensions: 205389
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)