Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1043
         (417 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6Q7X3 Cluster: Sensor protein; n=1; Sulfurovum sp. NBC...    33   2.4  
UniRef50_Q65M21 Cluster: YhcU; n=1; Bacillus licheniformis ATCC ...    31   7.2  

>UniRef50_A6Q7X3 Cluster: Sensor protein; n=1; Sulfurovum sp.
           NBC37-1|Rep: Sensor protein - Sulfurovum sp. (strain
           NBC37-1)
          Length = 683

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 260 GDSALAATTFLLRSQTPHREIYMENSCRKFSNLFFVACNRECQTKSSGFLLF 105
           G++ALA     L+  TP++ +Y++    K S    +A  RE +T+  G  LF
Sbjct: 590 GEAALALLKEGLKQNTPYQLVYLDKQMPKLSGSEVIARYREMETQKRGKRLF 641


>UniRef50_Q65M21 Cluster: YhcU; n=1; Bacillus licheniformis ATCC
           14580|Rep: YhcU - Bacillus licheniformis (strain DSM 13
           / ATCC 14580)
          Length = 119

 Score = 31.5 bits (68), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 89  IRAVLQITKNRWILFDIHGYTRRRRDLKTSGSYFPYRSHD 208
           I A+L   K +W+L D   + +  R L   G YFP  S D
Sbjct: 68  IHALLTKAKRKWVLKDRDLFDKNSRKLNDCGLYFPLTSAD 107


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 413,519,808
Number of Sequences: 1657284
Number of extensions: 7978640
Number of successful extensions: 19585
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19583
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19465676618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)