BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1043 (417 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 26 2.7 SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 4.7 SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 24 8.2 SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 24 8.2 SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 24 8.2 SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 24 8.2 >SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 809 Score = 25.8 bits (54), Expect = 2.7 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +1 Query: 274 ERYPICGTYSVSANNTTATVKISMKMKTPPKRLRRKKMTIARTVMATS 417 E +P C T +VS ++T VKI TPP R + + ++AT+ Sbjct: 720 EGHPRCPTLAVSGIDST--VKIFNTENTPPSGCSRNHTSNSYKIIATN 765 >SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces pombe|chr 1|||Manual Length = 2280 Score = 25.0 bits (52), Expect = 4.7 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +3 Query: 279 IPHLRDIFGLSQQYDGNCKNFDEN 350 IPH+R+++GL + D F +N Sbjct: 425 IPHIRELYGLPRDGDSEIDFFFQN 448 >SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccharomyces pombe|chr 2|||Manual Length = 344 Score = 24.2 bits (50), Expect = 8.2 Identities = 8/24 (33%), Positives = 14/24 (58%) Frame = -1 Query: 384 LFSS*SFWWCLHFHRNFYSCRRIV 313 LF S W CLHF + + ++++ Sbjct: 109 LFLSYWIWTCLHFSKIIFPAQKVI 132 >SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosaccharomyces pombe|chr 2|||Manual Length = 344 Score = 24.2 bits (50), Expect = 8.2 Identities = 8/24 (33%), Positives = 14/24 (58%) Frame = -1 Query: 384 LFSS*SFWWCLHFHRNFYSCRRIV 313 LF S W CLHF + + ++++ Sbjct: 109 LFLSYWIWTCLHFSKIIFPAQKVI 132 >SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosaccharomyces pombe|chr 1||Partial|Manual Length = 316 Score = 24.2 bits (50), Expect = 8.2 Identities = 8/24 (33%), Positives = 14/24 (58%) Frame = -1 Query: 384 LFSS*SFWWCLHFHRNFYSCRRIV 313 LF S W CLHF + + ++++ Sbjct: 81 LFLSYWIWTCLHFSKIIFPAQKVI 104 >SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccharomyces pombe|chr 1|||Manual Length = 344 Score = 24.2 bits (50), Expect = 8.2 Identities = 8/24 (33%), Positives = 14/24 (58%) Frame = -1 Query: 384 LFSS*SFWWCLHFHRNFYSCRRIV 313 LF S W CLHF + + ++++ Sbjct: 109 LFLSYWIWTCLHFSKIIFPAQKVI 132 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,726,851 Number of Sequences: 5004 Number of extensions: 34040 Number of successful extensions: 76 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 76 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 146319408 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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