Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1043
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   2.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   4.7  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    24   8.2  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    24   8.2  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    24   8.2  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    24   8.2  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 274 ERYPICGTYSVSANNTTATVKISMKMKTPPKRLRRKKMTIARTVMATS 417
           E +P C T +VS  ++T  VKI     TPP    R   + +  ++AT+
Sbjct: 720 EGHPRCPTLAVSGIDST--VKIFNTENTPPSGCSRNHTSNSYKIIATN 765


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 279 IPHLRDIFGLSQQYDGNCKNFDEN 350
           IPH+R+++GL +  D     F +N
Sbjct: 425 IPHIRELYGLPRDGDSEIDFFFQN 448


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 384 LFSS*SFWWCLHFHRNFYSCRRIV 313
           LF S   W CLHF +  +  ++++
Sbjct: 109 LFLSYWIWTCLHFSKIIFPAQKVI 132


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 384 LFSS*SFWWCLHFHRNFYSCRRIV 313
           LF S   W CLHF +  +  ++++
Sbjct: 109 LFLSYWIWTCLHFSKIIFPAQKVI 132


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 384 LFSS*SFWWCLHFHRNFYSCRRIV 313
           LF S   W CLHF +  +  ++++
Sbjct: 81  LFLSYWIWTCLHFSKIIFPAQKVI 104


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 384 LFSS*SFWWCLHFHRNFYSCRRIV 313
           LF S   W CLHF +  +  ++++
Sbjct: 109 LFLSYWIWTCLHFSKIIFPAQKVI 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,851
Number of Sequences: 5004
Number of extensions: 34040
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)