Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1043
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0191 - 1289442-1289875,1290073-1290154,1291046-1291090,129...    30   0.65 
01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471...    28   2.6  
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884...    27   6.0  
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135     27   8.0  

>02_01_0191 -
           1289442-1289875,1290073-1290154,1291046-1291090,
           1291274-1291357,1291428-1291631,1291735-1291894,
           1292042-1292292
          Length = 419

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 238 PLSC*DHKHLIVRSIWKIAAGSFQISSSSRVTVNVKQN 125
           P  C D +++I R IWK+    + ++ S      ++QN
Sbjct: 207 PFFCSDREYIIARRIWKLGGAYYCVTKSLPALTRMQQN 244


>01_04_0103 +
           16046012-16046018,16046214-16046366,16046908-16047158,
           16047509-16047631,16047818-16047931,16048153-16048315,
           16048867-16049462
          Length = 468

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 248 VRCHHDVRTSDTP 286
           V CHHD +TS+TP
Sbjct: 217 VHCHHDAKTSETP 229


>01_01_1116 +
           8839946-8840048,8840142-8842064,8842192-8842307,
           8843340-8843763,8845187-8845452
          Length = 943

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -2

Query: 203 EIYMENSCRKFSNLFFVACNRECQTKSSGFLLFGAQHVFLL*NATVFFFVFCSCFGTVLR 24
           ++ + +  RK  N+  +AC R+C+ K     L G     L  N  V+F  F     ++  
Sbjct: 56  QVAIRSLTRKGLNVSVLACLRDCRNKRFKDSLLGMMEASLS-NGLVYFNTFPDFSVSLSD 114

Query: 23  TYVHVLL 3
           T +H +L
Sbjct: 115 TDIHKVL 121


>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
          Length = 1275

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -2

Query: 203 EIYMENSCRKFSNLFFVACNRECQTKSSGFLLFGAQHVFLL*NATVFFFVFCSCFGTVLR 24
           ++ + +  RK  N+  +AC R+C+ K     L G     L  N  V+F  F     ++  
Sbjct: 56  QVAIRSLTRKGLNVSVLACLRDCRNKRFKDSLLGMVEASLS-NGPVYFNTFPDFSVSLSD 114

Query: 23  TYVHVLL 3
           T +H +L
Sbjct: 115 TNIHKVL 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,322,732
Number of Sequences: 37544
Number of extensions: 220405
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)