BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1043 (417 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_01_0191 - 1289442-1289875,1290073-1290154,1291046-1291090,129... 30 0.65 01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471... 28 2.6 01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884... 27 6.0 08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 27 8.0 >02_01_0191 - 1289442-1289875,1290073-1290154,1291046-1291090, 1291274-1291357,1291428-1291631,1291735-1291894, 1292042-1292292 Length = 419 Score = 30.3 bits (65), Expect = 0.65 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = -3 Query: 238 PLSC*DHKHLIVRSIWKIAAGSFQISSSSRVTVNVKQN 125 P C D +++I R IWK+ + ++ S ++QN Sbjct: 207 PFFCSDREYIIARRIWKLGGAYYCVTKSLPALTRMQQN 244 >01_04_0103 + 16046012-16046018,16046214-16046366,16046908-16047158, 16047509-16047631,16047818-16047931,16048153-16048315, 16048867-16049462 Length = 468 Score = 28.3 bits (60), Expect = 2.6 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +2 Query: 248 VRCHHDVRTSDTP 286 V CHHD +TS+TP Sbjct: 217 VHCHHDAKTSETP 229 >01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307, 8843340-8843763,8845187-8845452 Length = 943 Score = 27.1 bits (57), Expect = 6.0 Identities = 18/67 (26%), Positives = 31/67 (46%) Frame = -2 Query: 203 EIYMENSCRKFSNLFFVACNRECQTKSSGFLLFGAQHVFLL*NATVFFFVFCSCFGTVLR 24 ++ + + RK N+ +AC R+C+ K L G L N V+F F ++ Sbjct: 56 QVAIRSLTRKGLNVSVLACLRDCRNKRFKDSLLGMMEASLS-NGLVYFNTFPDFSVSLSD 114 Query: 23 TYVHVLL 3 T +H +L Sbjct: 115 TDIHKVL 121 >08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 Length = 1275 Score = 26.6 bits (56), Expect = 8.0 Identities = 18/67 (26%), Positives = 31/67 (46%) Frame = -2 Query: 203 EIYMENSCRKFSNLFFVACNRECQTKSSGFLLFGAQHVFLL*NATVFFFVFCSCFGTVLR 24 ++ + + RK N+ +AC R+C+ K L G L N V+F F ++ Sbjct: 56 QVAIRSLTRKGLNVSVLACLRDCRNKRFKDSLLGMVEASLS-NGPVYFNTFPDFSVSLSD 114 Query: 23 TYVHVLL 3 T +H +L Sbjct: 115 TNIHKVL 121 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,322,732 Number of Sequences: 37544 Number of extensions: 220405 Number of successful extensions: 486 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 482 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 486 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 754585524 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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