Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1043
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52475| Best HMM Match : Herpes_teg_N (HMM E-Value=2.3)              29   2.0  
SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)                  27   8.2  
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    27   8.2  
SB_24685| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-06)                 27   8.2  
SB_10366| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)              27   8.2  

>SB_52475| Best HMM Match : Herpes_teg_N (HMM E-Value=2.3)
          Length = 177

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 110 TKNRWILFDIHGYTRRRRDLKTSGSYFPYRSHDEVFVIST 229
           T   W+LFD H   +   D+ T   +F    H E   +++
Sbjct: 135 TSQTWLLFDSHNRDQNELDILTGKPFFLSSKHYETLAVTS 174


>SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 250 HSPLPLSC*DHKHL-IVRSIWKIAAGSFQISSSSRVTVNVKQNPA 119
           H P+PL   +HKH+ + R   +++ GS   +++  + ++ ++ P+
Sbjct: 368 HVPIPLHRVEHKHIALARGSARLSIGSPAYAANRTLYIDARKRPS 412


>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
          Length = 408

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 143 GYTRRRRDLKTSGSYFPYRSHDEVFVIST 229
           GY   +   K  G YF Y + DE F ++T
Sbjct: 118 GYNAVKSKGKAKGKYFLYTNRDEPFCVTT 146


>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 71  LHFITKIRAVLQITKNRWILFDIHGYTRRRRDLKTSGSYFPYRSHDE 211
           L ++T ++ +    +N+  +F I GY R +      GSY  +   D+
Sbjct: 463 LKYLTAVKQLTPAIRNKAEVFMIKGYQREQTYRHPEGSYSAFGERDK 509


>SB_24685| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-06)
          Length = 311

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 307 SANNTTATVKISMKMKTPPKRL 372
           S NN TATV  S++ +TP KR+
Sbjct: 271 STNNKTATVPSSLQNQTPLKRV 292


>SB_10366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 227 LRSQTPHREIYMENSCRKFSNLF-FVACNRECQT 129
           LRS  PH E+ ++   +K + L   +   R CQT
Sbjct: 243 LRSMPPHMELSLKELTKKLTTLLAILTVQRRCQT 276


>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
          Length = 264

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 71  LHFITKIRAVLQITKNRWILFDIHGYTRRRRDLKTSGSYFPYRSHDE 211
           L ++T ++ +    +N+  +F I GY R +      GSY  +   D+
Sbjct: 161 LKYLTAVKQLTPAIRNKAEVFMIKGYQREQTYRHPEGSYSAFGERDK 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,401,036
Number of Sequences: 59808
Number of extensions: 271539
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)