Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1043
         (417 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M64347-1|AAA58470.1|  731|Homo sapiens fgflr protein.                  29   8.2  
M58051-1|AAA52450.1|  806|Homo sapiens fibroblast growth factor ...    29   8.2  
BC020797-1|AAH20797.1|  188|Homo sapiens ADP-ribosylation-like f...    29   8.2  
BC005143-1|AAH05143.1|  188|Homo sapiens ADP-ribosylation-like f...    29   8.2  
AY768549-1|AAU89726.1|  806|Homo sapiens fibroblast growth facto...    29   8.2  
AY102608-1|AAM28950.1|  188|Homo sapiens ADP-ribosylation-like f...    29   8.2  
AK223566-1|BAD97286.1|  188|Homo sapiens ADP-ribosylation-like f...    29   8.2  
AF487554-2|AAM22078.1|  769|Homo sapiens fibroblast growth facto...    29   8.2  
AF487554-1|AAM22079.1|  771|Homo sapiens fibroblast growth facto...    29   8.2  
AF245114-1|AAF63380.1|  694|Homo sapiens fibroblast growth facto...    29   8.2  
AF125530-1|AAF17224.1|  188|Homo sapiens jmx protein protein.          29   8.2  
AF115965-1|AAP97237.1|  188|Homo sapiens JM5 protein protein.          29   8.2  
AF070523-1|AAC64360.1|  188|Homo sapiens JWA protein protein.          29   8.2  
AB209441-1|BAD92678.1|  879|Homo sapiens fibroblast growth facto...    29   8.2  
AB097051-1|BAC77404.1|  188|Homo sapiens putative MAPK activatin...    29   8.2  
AB052638-1|BAD83603.1|  188|Homo sapiens addicsin protein.             29   8.2  
AB014765-1|BAC66462.1|  188|Homo sapiens DERP11 (dermal papilla ...    29   8.2  

>M64347-1|AAA58470.1|  731|Homo sapiens fgflr protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 200 SHDEVFVISTR-KW*RRVRCHHDVRTSDTPSAG 295
           SH++    S R +  +RV CH  VR +D PS+G
Sbjct: 25  SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSG 57


>M58051-1|AAA52450.1|  806|Homo sapiens fibroblast growth factor
           receptor protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 200 SHDEVFVISTR-KW*RRVRCHHDVRTSDTPSAG 295
           SH++    S R +  +RV CH  VR +D PS+G
Sbjct: 100 SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSG 132


>BC020797-1|AAH20797.1|  188|Homo sapiens ADP-ribosylation-like
           factor 6 interacting protein 5 protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 407 ITVRAIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
           + V  +  +FL+S+FGGV +F+   T  ++L+
Sbjct: 102 VMVVMLASYFLISMFGGVMVFVFGITFPLLLM 133


>BC005143-1|AAH05143.1|  188|Homo sapiens ADP-ribosylation-like
           factor 6 interacting protein 5 protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 407 ITVRAIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
           + V  +  +FL+S+FGGV +F+   T  ++L+
Sbjct: 102 VMVVMLASYFLISMFGGVMVFVFGITFPLLLM 133


>AY768549-1|AAU89726.1|  806|Homo sapiens fibroblast growth factor
           receptor 3 (achondroplasia, thanatophoric dwarfism)
           protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 200 SHDEVFVISTR-KW*RRVRCHHDVRTSDTPSAG 295
           SH++    S R +  +RV CH  VR +D PS+G
Sbjct: 100 SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSG 132


>AY102608-1|AAM28950.1|  188|Homo sapiens ADP-ribosylation-like
           factor 6 interacting protein 5 protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 407 ITVRAIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
           + V  +  +FL+S+FGGV +F+   T  ++L+
Sbjct: 102 VMVVMLASYFLISMFGGVMVFVFGITFPLLLM 133


>AK223566-1|BAD97286.1|  188|Homo sapiens ADP-ribosylation-like
           factor 6 interacting protein 5 variant protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 407 ITVRAIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
           + V  +  +FL+S+FGGV +F+   T  ++L+
Sbjct: 102 VMVVMLASYFLISMFGGVMVFVFGITFPLLLM 133


>AF487554-2|AAM22078.1|  769|Homo sapiens fibroblast growth factor
           receptor 3 protein.
          Length = 769

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 200 SHDEVFVISTR-KW*RRVRCHHDVRTSDTPSAG 295
           SH++    S R +  +RV CH  VR +D PS+G
Sbjct: 63  SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSG 95


>AF487554-1|AAM22079.1|  771|Homo sapiens fibroblast growth factor
           receptor 3 protein.
          Length = 771

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 200 SHDEVFVISTR-KW*RRVRCHHDVRTSDTPSAG 295
           SH++    S R +  +RV CH  VR +D PS+G
Sbjct: 63  SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSG 95


>AF245114-1|AAF63380.1|  694|Homo sapiens fibroblast growth factor
           receptor 3 protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 200 SHDEVFVISTR-KW*RRVRCHHDVRTSDTPSAG 295
           SH++    S R +  +RV CH  VR +D PS+G
Sbjct: 100 SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSG 132


>AF125530-1|AAF17224.1|  188|Homo sapiens jmx protein protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 407 ITVRAIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
           + V  +  +FL+S+FGGV +F+   T  ++L+
Sbjct: 102 VMVVMLASYFLISMFGGVMVFVFGITFPLLLM 133


>AF115965-1|AAP97237.1|  188|Homo sapiens JM5 protein protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 407 ITVRAIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
           + V  +  +FL+S+FGGV +F+   T  ++L+
Sbjct: 102 VMVVMLASYFLISMFGGVMVFVFGITFPLLLM 133


>AF070523-1|AAC64360.1|  188|Homo sapiens JWA protein protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 407 ITVRAIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
           + V  +  +FL+S+FGGV +F+   T  ++L+
Sbjct: 102 VMVVMLASYFLISMFGGVMVFVFGITFPLLLM 133


>AB209441-1|BAD92678.1|  879|Homo sapiens fibroblast growth factor
           receptor 3 isoform 1 precursor variant protein.
          Length = 879

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 200 SHDEVFVISTR-KW*RRVRCHHDVRTSDTPSAG 295
           SH++    S R +  +RV CH  VR +D PS+G
Sbjct: 187 SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSG 219


>AB097051-1|BAC77404.1|  188|Homo sapiens putative MAPK activating
           protein protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 407 ITVRAIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
           + V  +  +FL+S+FGGV +F+   T  ++L+
Sbjct: 102 VMVVMLASYFLISMFGGVMVFVFGITFPLLLM 133


>AB052638-1|BAD83603.1|  188|Homo sapiens addicsin protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 407 ITVRAIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
           + V  +  +FL+S+FGGV +F+   T  ++L+
Sbjct: 102 VMVVMLASYFLISMFGGVMVFVFGITFPLLLM 133


>AB014765-1|BAC66462.1|  188|Homo sapiens DERP11 (dermal papilla
           derived protein 11) protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 407 ITVRAIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
           + V  +  +FL+S+FGGV +F+   T  ++L+
Sbjct: 102 VMVVMLASYFLISMFGGVMVFVFGITFPLLLM 133


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,816,713
Number of Sequences: 237096
Number of extensions: 1099277
Number of successful extensions: 2173
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2173
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)