Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1043
         (417 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT009937-1|AAQ22406.1| 1872|Drosophila melanogaster SD06328p pro...    30   1.4  
AE013599-3254|AAF46751.2| 1831|Drosophila melanogaster CG30263-P...    29   1.9  
AY084162-1|AAL89900.1|  331|Drosophila melanogaster RE37150p pro...    27   7.6  
AE014296-1729|AAF50210.2| 1392|Drosophila melanogaster CG32046-P...    27   7.6  

>BT009937-1|AAQ22406.1| 1872|Drosophila melanogaster SD06328p protein.
          Length = 1872

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 4    SSTCTYVRNTVPKQEQKTKKKTVAFYNKNTCCAPNNKKP 120
            +S+ T   N     E K K+K V+ + K++CC    KKP
Sbjct: 1535 NSSATTATNVQVIDETKPKRKKVSDWLKSSCCRSCRKKP 1573


>AE013599-3254|AAF46751.2| 1831|Drosophila melanogaster CG30263-PA
            protein.
          Length = 1831

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 4    SSTCTYVRNTVPKQEQKTKKKTVAFYNKNTCCAPNNKKP 120
            +S+ T   N     E K K+K ++ + K++CC    KKP
Sbjct: 1533 NSSATTATNVQVIDETKPKRKKISDWLKSSCCRSCRKKP 1571


>AY084162-1|AAL89900.1|  331|Drosophila melanogaster RE37150p
           protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 257 DSALAATTFLLRSQTPHREIYMENSCRKFS 168
           DS LAATT +   Q+ H +   E SC   S
Sbjct: 170 DSTLAATTIIRHHQSNHEQQQPEKSCPALS 199


>AE014296-1729|AAF50210.2| 1392|Drosophila melanogaster CG32046-PA,
            isoform A protein.
          Length = 1392

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 257  DSALAATTFLLRSQTPHREIYMENSCRKFS 168
            DS LAATT +   Q+ H +   E SC   S
Sbjct: 1231 DSTLAATTIIRHHQSNHEQQQPEKSCPALS 1260


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,326,839
Number of Sequences: 53049
Number of extensions: 396158
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1251032760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)