Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1043
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    30   0.59 
CU457740-5|CAM36335.1|  361|Caenorhabditis elegans Hypothetical ...    28   3.1  
AC024850-1|AAF60860.2|  404|Caenorhabditis elegans Groundhog (he...    27   4.1  
Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +1

Query: 226 NKKVVAASALSP*RQNERYPICGTYSVSANNTTATVKISMKMKTPPKRLRRKKMTIARTV 405
           +KKV A+SAL+  ++ E+ P C  ++V+A        ++ K K+  K L+        T+
Sbjct: 618 SKKVTASSALNKNKEKEKSPPC--FAVTAAEAKGAAAVA-KSKSRKKSLKNTPSVPTSTI 674

Query: 406 MATS 417
             TS
Sbjct: 675 TTTS 678


>CU457740-5|CAM36335.1|  361|Caenorhabditis elegans Hypothetical
           protein C50E10.5 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 392 IVIFFLLSLFGGVFIFIEIFTVA 324
           +++ F+LS+F G+FI + +F ++
Sbjct: 33  LLLEFILSIFAGIFIIVTVFIIS 55


>AC024850-1|AAF60860.2|  404|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 16 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 247 SALSP*RQNERYPICGTYSVSANNTTATVKISMKMKTPPKRLRRKK 384
           S  SP  + E  P+ G   +S  +   +  +   M+ PP++ RRK+
Sbjct: 169 SRYSPLARVEIPPVSGMSEISGISQRTSHSVGQTMQNPPRKRRRKQ 214


>Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical
           protein Y7A9C.7 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 135 SNKIQRFFVIWSTARIFVIKC 73
           SN  QRF +IW TA + + KC
Sbjct: 215 SNTPQRF-IIWQTATVVIFKC 234


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
           protein F36H1.2c protein.
          Length = 1427

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 205 VRSIWKIAAGS-FQISSSSRVTVNVKQNPAVFCYLEHST 92
           +R  W+ AA S F ++S+  VT+N  Q   +F  +EH T
Sbjct: 5   LRRPWQEAASSAFAVASALPVTMNSTQIAELFEQVEHGT 43


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical
           protein F36H1.2b protein.
          Length = 1379

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 205 VRSIWKIAAGS-FQISSSSRVTVNVKQNPAVFCYLEHST 92
           +R  W+ AA S F ++S+  VT+N  Q   +F  +EH T
Sbjct: 5   LRRPWQEAASSAFAVASALPVTMNSTQIAELFEQVEHGT 43


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical
           protein F36H1.2a protein.
          Length = 1398

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 205 VRSIWKIAAGS-FQISSSSRVTVNVKQNPAVFCYLEHST 92
           +R  W+ AA S F ++S+  VT+N  Q   +F  +EH T
Sbjct: 5   LRRPWQEAASSAFAVASALPVTMNSTQIAELFEQVEHGT 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,911,499
Number of Sequences: 27780
Number of extensions: 204948
Number of successful extensions: 629
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)