Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1043
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   4.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   5.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   9.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic
          acetylcholine receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 13 CTYVRNTVPKQEQKTK 60
          C Y R+ +P+Q+  TK
Sbjct: 46 CDYDRDIIPEQKNATK 61


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 164 DLKTSGSYFPYRSHDEVFVISTR 232
           +LK+  +     SH+  FV+ TR
Sbjct: 173 NLKSGSNTIERNSHESXFVVPTR 195


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 25  RNTVPKQEQKTKKKTVAFYNKNTCCAP 105
           RN+  K +Q+ +K    F   N+C  P
Sbjct: 287 RNSAYKIDQRIQKGLFLFACTNSCMNP 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,460
Number of Sequences: 438
Number of extensions: 2386
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)