Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1043
(417 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containi... 27 3.8
At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG... 27 5.1
At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG... 27 5.1
At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG... 27 5.1
At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial... 27 5.1
At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containi... 27 5.1
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ... 27 5.1
At4g15670.1 68417.m02387 glutaredoxin family protein contains IN... 27 6.7
At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) simil... 27 6.7
At5g60300.2 68418.m07558 lectin protein kinase family protein co... 26 8.9
At5g60300.1 68418.m07557 lectin protein kinase family protein co... 26 8.9
At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak ... 26 8.9
>At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1006
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 369 SFWWCLHFHRNFYSCRRIV 313
SFW L FH+ +Y+CRR+V
Sbjct: 22 SFWRPL-FHQPYYNCRRVV 39
>At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 280 IARSDVMVTAHSPLPLSC*DHKHLIVRSIWKIAAGSFQISSSSRVTV 140
++RS+ VT SP PL L S +IA GSF ++R+ +
Sbjct: 9 LSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDI 55
>At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 280 IARSDVMVTAHSPLPLSC*DHKHLIVRSIWKIAAGSFQISSSSRVTV 140
++RS+ VT SP PL L S +IA GSF ++R+ +
Sbjct: 9 LSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDI 55
>At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 280 IARSDVMVTAHSPLPLSC*DHKHLIVRSIWKIAAGSFQISSSSRVTV 140
++RS+ VT SP PL L S +IA GSF ++R+ +
Sbjct: 9 LSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDI 55
>At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial,
putative / H(+)-transporting two-sector ATPase, delta
(OSCP) subunit, putative identical to SP|Q96251; similar
to SP|P22778 ATP synthase delta chain, mitochondrial
precursor (EC 3.6.3.14) (Oligomycin sensitivity
conferral protein) (OSCP) {Ipomoea batatas}; contains
Pfam profile PF00213: ATP synthase F1, delta subunit
Length = 238
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 229 KKVVAASALSP*RQNERYPICGTYSVSANNTTATVKISMKM 351
K + ++S R +P TY+ ++ TTA VK+ + +
Sbjct: 13 KTIAVTDSVSSVRSKSLFPALRTYATASAQTTANVKVPIAL 53
>At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 932
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 254 SALAATTFLLRSQTPHREIYMENSCRKFSNLFFVACNRECQTKSSGFLLFG 102
SA + F +++ +E+ E SC KFS +A C SS L+FG
Sbjct: 468 SAFSQNGFTHKAKNLFKEVVSEYSCSKFSLSTVLAILTSCD--SSDSLIFG 516
>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
similar to RNA-directed RNA polymerase GB:CAA09697
GI:4138282 [Nicotiana tabacum]
Length = 1107
Score = 27.1 bits (57), Expect = 5.1
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = -3
Query: 310 LRPNMSRRWGIARSDVMVTAHSPLPLSC*DHKHLIVRSIWKIAAGSFQISSSSRVTVNVK 131
LR N + W A D + AH + DH +R++ K AA Q SSSR T+NV+
Sbjct: 460 LRENSA--WMFAPIDRITAAHIRAWMGDFDH----IRNVAKYAARLGQSFSSSRETLNVR 513
Query: 130 QN 125
+
Sbjct: 514 SD 515
>At4g15670.1 68417.m02387 glutaredoxin family protein contains
INTERPRO Domain IPR002109, Glutaredoxin
(thioltransferase)
Length = 102
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 40 KQEQKTKKKTVAFYNKNTCCAPNNKKPL 123
K ++ T +K++ ++KN+CC + K L
Sbjct: 3 KLQKMTSEKSLVIFSKNSCCMSHTIKTL 30
>At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) similar
to SP|Q64548 Reticulon 1 (Neuroendocrine-specific
protein) {Rattus norvegicus}; contains Pfam profile
PF02453: Reticulon
Length = 271
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 416 DVAITVRAIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
D+ + AI ++LS+ GG + F+ + +A+VLL
Sbjct: 186 DIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLL 220
>At5g60300.2 68418.m07558 lectin protein kinase family protein
contains Pfam domains, PF00069: Protein kinase domain
and PF00139: Legume lectins beta domain
Length = 718
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 128 LFDIHGYTRRRRDLKTSGSYFPYRSHDE 211
L + GY RR+R+L Y P S DE
Sbjct: 400 LVPLFGYCRRKRELLLVSEYMPNGSLDE 427
>At5g60300.1 68418.m07557 lectin protein kinase family protein
contains Pfam domains, PF00069: Protein kinase domain
and PF00139: Legume lectins beta domain
Length = 718
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 128 LFDIHGYTRRRRDLKTSGSYFPYRSHDE 211
L + GY RR+R+L Y P S DE
Sbjct: 400 LVPLFGYCRRKRELLLVSEYMPNGSLDE 427
>At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 275
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 395 AIVIFFLLSLFGGVFIFIEIFTVAVVLL 312
AI ++LS+ GG F F+ + +A+VLL
Sbjct: 197 AIAGLWVLSILGGCFNFLTLAYIALVLL 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,073,404
Number of Sequences: 28952
Number of extensions: 178763
Number of successful extensions: 463
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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