BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1042 (438 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 27 0.96 SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 27 0.96 SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 1.7 SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 26 2.2 SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual 26 2.2 SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 3.9 SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 3.9 SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha... 25 6.7 SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 24 8.9 >SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1064 Score = 27.5 bits (58), Expect = 0.96 Identities = 19/75 (25%), Positives = 32/75 (42%) Frame = +2 Query: 92 RKISNLRYADDTTLLASTRDEIEVLLRRLETTALDFGLAINRDKTKMMIVDRANINQPEV 271 RK SNL+ DD + +++ L +++ F + R K D +NI E Sbjct: 990 RKKSNLQVTDDVRMTYKIKNDTIGLESAVDSNEALFSKVLRRPIEKETGADESNIIASEE 1049 Query: 272 QHIAGCEVVNSYVYL 316 Q + G + S + L Sbjct: 1050 QDVQGATFLLSLLRL 1064 >SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 489 Score = 27.5 bits (58), Expect = 0.96 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +3 Query: 21 LIYTQSI*CG*FLKIGIKEYPLVVGKYQI*DTPMILPSWRQPETKS 158 ++Y + CG F+ G E+ + G Y+ +T + L WR P+T S Sbjct: 63 IVYLIIVACGSFIITGGIEFAIAYGMYKKTETSVRL--WRLPDTLS 106 >SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 531 Score = 26.6 bits (56), Expect = 1.7 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +3 Query: 60 KIGIKEYPLVVGKYQI*DTPMILPSWRQPETKS 158 ++GI YP V P+I+ WR TKS Sbjct: 45 RLGISLYPSVTSDASTTTIPVIIEKWRNKITKS 77 >SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2111 Score = 26.2 bits (55), Expect = 2.2 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +2 Query: 236 IVDRANINQPE-VQHIAGCEVVNSYVYLGSTITN 334 ++D A + E + + CE++N+ LG+T++N Sbjct: 1307 LIDEAEVTLEEGIPSVVECEIINTDRTLGATLSN 1340 >SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 268 Score = 26.2 bits (55), Expect = 2.2 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 13/61 (21%) Frame = -3 Query: 181 LQPAKKHLDFVSG----*RQEGSIIGVSQI*YFPTTN--GYSFIPI-------FKNYPHY 41 +Q A+KHL+FVS R GSI+ Q Y+P ++ +S IP+ +N+PH Sbjct: 72 IQKARKHLEFVSSRIGPVRNPGSIV-EDQFNYYPISSIKKFSRIPVQLQPPLNKQNFPHN 130 Query: 40 I 38 I Sbjct: 131 I 131 >SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1253 Score = 25.4 bits (53), Expect = 3.9 Identities = 12/47 (25%), Positives = 27/47 (57%) Frame = -3 Query: 262 LVDVSTIYDHHFGLITIDRKSKIQRGSLQPAKKHLDFVSG*RQEGSI 122 LVDV+ ++DH GL + I + S + ++++ F+ +++ S+ Sbjct: 829 LVDVNMLFDHALGLYDLKLALLIAQQSQKDPREYVPFLHEFQKQESL 875 >SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 351 Score = 25.4 bits (53), Expect = 3.9 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +2 Query: 80 SVGGRKISNLRYADDTTLLASTRDEIEVLLRRLETTALD 196 S GG+K+ + + + L S+ D +E+LL+ +LD Sbjct: 298 SPGGKKLYHYLWKNSNALRISSNDLLEILLKHGVYVSLD 336 >SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccharomyces pombe|chr 1|||Manual Length = 246 Score = 24.6 bits (51), Expect = 6.7 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 301 INYLASRYMLDFRLVDVSTIYDHHFGLITIDRKSK 197 + Y+A + +D LVD TIY LI +DR K Sbjct: 6 VKYMACLFDMDGLLVDSETIYTKTTNLI-LDRYGK 39 >SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 441 Score = 24.2 bits (50), Expect = 8.9 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 7/54 (12%) Frame = +2 Query: 107 LRYADDTTLLASTRDEIEVLL-------RRLETTALDFGLAINRDKTKMMIVDR 247 +RY + +L+AST +EIE L +L+ D L I D+++ + +D+ Sbjct: 216 IRYHNVDSLMASTLEEIEKLQSSIVHSPEKLKGKIADTSLRIQNDRSQQVELDK 269 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,851,519 Number of Sequences: 5004 Number of extensions: 36574 Number of successful extensions: 101 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 101 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 158122380 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -