Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1042
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   0.96 
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    27   0.96 
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   1.7  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   2.2  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     26   2.2  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   3.9  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   3.9  
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha...    25   6.7  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    24   8.9  

>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1064

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +2

Query: 92   RKISNLRYADDTTLLASTRDEIEVLLRRLETTALDFGLAINRDKTKMMIVDRANINQPEV 271
            RK SNL+  DD  +    +++   L   +++    F   + R   K    D +NI   E 
Sbjct: 990  RKKSNLQVTDDVRMTYKIKNDTIGLESAVDSNEALFSKVLRRPIEKETGADESNIIASEE 1049

Query: 272  QHIAGCEVVNSYVYL 316
            Q + G   + S + L
Sbjct: 1050 QDVQGATFLLSLLRL 1064


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 21  LIYTQSI*CG*FLKIGIKEYPLVVGKYQI*DTPMILPSWRQPETKS 158
           ++Y   + CG F+  G  E+ +  G Y+  +T + L  WR P+T S
Sbjct: 63  IVYLIIVACGSFIITGGIEFAIAYGMYKKTETSVRL--WRLPDTLS 106


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 60  KIGIKEYPLVVGKYQI*DTPMILPSWRQPETKS 158
           ++GI  YP V         P+I+  WR   TKS
Sbjct: 45  RLGISLYPSVTSDASTTTIPVIIEKWRNKITKS 77


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 236  IVDRANINQPE-VQHIAGCEVVNSYVYLGSTITN 334
            ++D A +   E +  +  CE++N+   LG+T++N
Sbjct: 1307 LIDEAEVTLEEGIPSVVECEIINTDRTLGATLSN 1340


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 13/61 (21%)
 Frame = -3

Query: 181 LQPAKKHLDFVSG----*RQEGSIIGVSQI*YFPTTN--GYSFIPI-------FKNYPHY 41
           +Q A+KHL+FVS      R  GSI+   Q  Y+P ++   +S IP+        +N+PH 
Sbjct: 72  IQKARKHLEFVSSRIGPVRNPGSIV-EDQFNYYPISSIKKFSRIPVQLQPPLNKQNFPHN 130

Query: 40  I 38
           I
Sbjct: 131 I 131


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = -3

Query: 262 LVDVSTIYDHHFGLITIDRKSKIQRGSLQPAKKHLDFVSG*RQEGSI 122
           LVDV+ ++DH  GL  +     I + S +  ++++ F+   +++ S+
Sbjct: 829 LVDVNMLFDHALGLYDLKLALLIAQQSQKDPREYVPFLHEFQKQESL 875


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 80  SVGGRKISNLRYADDTTLLASTRDEIEVLLRRLETTALD 196
           S GG+K+ +  + +   L  S+ D +E+LL+     +LD
Sbjct: 298 SPGGKKLYHYLWKNSNALRISSNDLLEILLKHGVYVSLD 336


>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 301 INYLASRYMLDFRLVDVSTIYDHHFGLITIDRKSK 197
           + Y+A  + +D  LVD  TIY     LI +DR  K
Sbjct: 6   VKYMACLFDMDGLLVDSETIYTKTTNLI-LDRYGK 39


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
 Frame = +2

Query: 107 LRYADDTTLLASTRDEIEVLL-------RRLETTALDFGLAINRDKTKMMIVDR 247
           +RY +  +L+AST +EIE L         +L+    D  L I  D+++ + +D+
Sbjct: 216 IRYHNVDSLMASTLEEIEKLQSSIVHSPEKLKGKIADTSLRIQNDRSQQVELDK 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,519
Number of Sequences: 5004
Number of extensions: 36574
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)